Automic VaultAutomic Vault

brew

Install seqkit with Homebrew, apt, Nix

Cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang. Version 2.13.0 via Homebrew; verified from local package data.

Install commandSecurity notes

install

Additional install commands

macOS

Homebrewverified · 100%
brew install seqkit

local Homebrew formula metadata

Linux

Debian aptverified · 92%
sudo apt install seqkit

Debian stable package indexes · seqkit · source: deb.debian.org

Nixverified · 92%
nix profile install nixpkgs#seqkit

nixpkgs package indexes · pkgs/by-name/se/seqkit/package.nix · source: api.github.com

overview

Package summary

Cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

Commands and aliases

  • seqkit

security posture

Risk level: green

narrow executable package without higher-risk signals.

Risk classifier

green risk · low confidence · appliance

Why

  • narrow executable package without higher-risk signals

Signals

  • metadata:no-higher-risk-signals

Install behavior

  • No Homebrew post-install hook is recorded in formula metadata.
  • Homebrew bottle metadata is available for 6 platform targets.
  • Build metadata lists 1 build dependencies.

Recommended review

Before unattended agent use, check whether the tool reads plaintext credentials, writes remote state, publishes artifacts, or shells out to plugins.

executables

Installed executables

CommandKindExposureNote
seqkitcliglobal executable

freshness

Version and freshness

These signals separate page generation age, package-manager activity, and upstream release comparison. Version lag is warned only when an evidence URL and comparable versions are present.

page generated2026-07-08
manager version2.13.0
manager updated
local dataok
upstreamcurrent
latest detectedv2.13.0

https://github.com/shenwei356/seqkit

  • infoNo package-manager update timestamp was available.low confidence

install metadata

Package metadata

Package keybrew:seqkit
Version2.13.0
Package managerHomebrew
Package manager pagehttps://formulae.brew.sh/formula/seqkit
Homepagehttps://bioinf.shenwei.me/seqkit
Repositoryhttps://github.com/shenwei356/seqkit
Upstream docshttps://bioinf.shenwei.me/seqkit
LicenseMIT
Source archivehttps://github.com/shenwei356/seqkit/archive/refs/tags/v2.13.0.tar.gz
Build dependenciesgo
Bottleavailable (on arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux)
Homebrew post-installnot defined
Servicenone declared

registry facts

Source database details

Source DatabaseHomebrew formula API
Taphomebrew/core
Full Nameseqkit
Version Scheme0
Revision0
Head VersionHEAD
Bottle Stable Root URLhttps://ghcr.io/v2/homebrew/core
Deprecatedno
Disabledno
Keg Onlyno
URL Keys
  • head
  • stable

source database matches

Other package-manager records

Matches are pulled from external package-manager indexes and kept separate from local Automic Vault package links.

Debian apt95%

seqkit 2.9.0+ds-1+b4

cross-platform and ultrafast toolkit for FASTA/Q file manipulation

https://github.com/shenwei356/seqkit

sudo apt install seqkit
  • Section: science
  • Architecture: amd64
  • Source Package: seqkit
  • 1 dependencies
  • normalized package name match
  • Matched by: Seqkit
Debian stable package indexes · deb.debian.org · Debian stable package indexes: seqkit from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Debian apt95%

seqkit-examples 2.9.0+ds-1

examples for seqkit: toolkit for FASTA/Q file manipulation

https://github.com/shenwei356/seqkit

sudo apt install seqkit-examples
  • Section: science
  • Architecture: all
  • Source Package: seqkit
  • normalized package name match
  • Matched by: Seqkit
Debian stable package indexes · deb.debian.org · Debian stable package indexes: seqkit-examples from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Nix95%

seqkit

nix profile install nixpkgs#seqkit
  • normalized package name match
  • Matched by: Seqkit
nixpkgs package indexes · api.github.com · nixpkgs package indexes: pkgs/by-name/se/seqkit/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1
Ubuntu apt95%

seqkit 2.3.1+ds-2

cross-platform and ultrafast toolkit for FASTA/Q file manipulation

https://github.com/shenwei356/seqkit

sudo apt install seqkit
  • Section: universe/science
  • Architecture: amd64
  • 1 dependencies
  • normalized package name match
  • Matched by: Seqkit
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: seqkit from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz
Ubuntu apt95%

seqkit-examples 2.3.1+ds-2

examples for seqkit: toolkit for FASTA/Q file manipulation

https://github.com/shenwei356/seqkit

sudo apt install seqkit-examples
  • Section: universe/science
  • Architecture: all
  • Source Package: seqkit
  • normalized package name match
  • Matched by: Seqkit
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: seqkit-examples from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz

package graph

Links come from deterministic package relationships, av.db category and tag curation, ecosystem matches, and package hub membership.

Related tools

  • goBuild dependency declared by Homebrew.

Same workflow

  • seqtkShares av.db curated category or tags: bioinformatics, cli, fasta, fastq, science.
  • hmmerShares av.db curated category or tags: bioinformatics, cli, science, sequence-analysis.
  • mmseqs2Shares av.db curated category or tags: bioinformatics, cli, science, sequence-analysis.
  • any2fastaShares av.db curated category or tags: bioinformatics, cli, fasta, science.
  • fastpShares av.db curated category or tags: bioinformatics, cli, fastq, science.
  • fastq-toolsShares av.db curated category or tags: bioinformatics, cli, fastq, science.

source trail

Generated from repository data

This page is generated by av-web from the private package SQLite artifact built by scripts/generate-pkg-sqlite.py.

Used sources

  • Geiger risk classifier
  • Nucleus package database
  • av.db category and tag curation
  • cross-ecosystem install command graph
  • external package-manager database matches
  • package relationship graph
  • package version freshness
  • package-page enrichment