Automic VaultAutomic Vault

topical

Scientific computing packages

Math, statistics, biology, chemistry, geospatial, and scientific computing packages.

summary

Why this package group is here

Scientific computing packages currently includes 385 package catalog entries. 0 have protected-tool coverage, 0 have approval-gate metadata, and 52 have non-low Geiger classifier findings. The grouping comes from package metadata, so it can stay current as that metadata changes.

Generated source

This hub uses the same local package data as individual package pages: Nucleus package metadata, Homebrew enrichment, Geiger classifier output, secret-handling manifests, and approval-gate seeds where available.

Review model

Use the hub to find command families that need tighter secret injection, approval gates, or manual review before agents run them.

High-signal tools

acl2generalized runtime or code generation signalchapelbroad file, network, media, or database tool signalflexiblasgeneralized runtime or code generation signaljuliageneralized runtime or code generation signalnumbatgeneralized runtime or code generation signalopenfstbroad file, network, media, or database tool signalottgeneralized runtime or code generation signalaamathnarrow executable package without higher-risk signalsabpoalibrary-like package without higher-risk signalsabricatenarrow executable package without higher-risk signalsabyssnarrow executable package without higher-risk signalsadapterremovalRapid adapter trimming, identification, and read merging

Related hubs

Terminal utility packagesCommand-line utilities with local package pages, executable metadata, and Automic Vault security notes.375Homebrew utility packagesHomebrew packages with local package pages that need at least one crawlable package-graph path.362Networking and protocol packagesNetwork clients, protocol utilities, download tools, and remote-service helpers.340Source-control packagesSource-control packages can read or mutate repositories, issue trackers, release flows, and authenticated developer state.130Text processing packagesPackages used to inspect, transform, search, render, or generate text and structured documents.69Database and data packagesPackages that query, migrate, inspect, or operate databases and data files.64Language runtime packagesLanguage runtimes, package ecosystems, and interpreter-adjacent packages.56Secret-risk packagesPackages with protected-tool coverage, approval-gate metadata, or non-low Geiger findings deserve explicit review before agents run them.54

Representative package spokes

katexFast math typesetting for the web.miller-rabinMiller Rabin algorithm for primality testmathjsMath.js is an extensive math library for JavaScript and Node.js. It features a flexible expression parser with support for symbolic…wellknownconvert wkt to geojsontinyldSimple and Performant Language detection library (pure JS and zero dependencies)stream-log-statsPrints statistics from the incoming web log stream to the consolejs-graph-algorithmsPackage implements data structures and algorithms for processing various types of graphsstemmerPorter Stemmer algorithmsota-adif-updaterA CLI utility to add SOTA and POTA references to an existing ADIF filedouble-metaphoneDouble Metaphone algorithmhlims-mcpHLIMS Agent MCP Server - stdio proxy for remote HLIMS MCP service (硬件中心实验室信息管理系统)mapshaperA tool for editing geospatial data for mapping and GIS.mprojA JavaScript port of the Proj.4 cartographic projections librarysyllableCount syllables in English wordsdice-coefficientSørensen–Dice coefficientusng.jsAMD compatible script for converting LL, UTM, USNG, and MGRS

packages

Indexed package pages

PackageManagerSignalsWhy it appears here
acl2Homebrewyellow risk, v8.7generalized runtime or code generation signal
chapelHomebrewyellow risk, v2.9.0broad file, network, media, or database tool signal
flexiblasHomebrewyellow risk, v3.5.0generalized runtime or code generation signal
juliaHomebrewyellow risk, v1.12.6generalized runtime or code generation signal
numbatHomebrewyellow risk, v1.23.0generalized runtime or code generation signal
openfstHomebrewyellow risk, v1.8.4broad file, network, media, or database tool signal
ottHomebrewyellow risk, v0.34generalized runtime or code generation signal
aamathHomebrewgreen risk, v0.3narrow executable package without higher-risk signals
abpoaHomebrewgreen risk, v1.5.6library-like package without higher-risk signals
abricateHomebrewgreen risk, v1.4.0narrow executable package without higher-risk signals
abyssHomebrewgreen risk, v2.3.10narrow executable package without higher-risk signals
adapterremovalHomebrewv3.0.1no executable entrypoint in the package index
admeshHomebrewgreen risk, v0.98.5narrow executable package without higher-risk signals
alevin-fryHomebrewv0.16.0no executable entrypoint in the package index
any2fastaHomebrewgreen risk, v0.8.1narrow executable package without higher-risk signals
apache-arrowHomebrewgreen risk, v24.0.0narrow executable package without higher-risk signals
apache-opennlpHomebrewgreen risk, v2.5.10narrow executable package without higher-risk signals
arxiv_latex_cleanerHomebrewgreen risk, v1.0.11narrow executable package without higher-risk signals
asciitexHomebrewgreen risk, v0.21narrow executable package without higher-risk signals
astrotermHomebrewgreen risk, v1.2.0narrow executable package without higher-risk signals
augustusHomebrewgreen risk, v3.5.0narrow executable package without higher-risk signals
autocyclerHomebrewgreen risk, v0.6.2narrow executable package without higher-risk signals
aws-lcHomebrewv5.1.0no executable entrypoint in the package index
badreadHomebrewgreen risk, v0.4.2narrow executable package without higher-risk signals
bamtoolsHomebrewgreen risk, v2.5.3narrow executable package without higher-risk signals
bbtoolsHomebrewv39.95no executable entrypoint in the package index
bcftoolsHomebrewgreen risk, v1.24narrow executable package without higher-risk signals
beastHomebrewv10.5.0no executable entrypoint in the package index
bedtkHomebrewgreen risk, v1.2narrow executable package without higher-risk signals
bibcleanHomebrewgreen risk, v3.07narrow executable package without higher-risk signals
bioawkHomebrewgreen risk, v1.0narrow executable package without higher-risk signals
biodiffHomebrewgreen risk, v1.2.1narrow executable package without higher-risk signals
bioperlHomebrewgreen risk, v1.7.8narrow executable package without higher-risk signals
biosigHomebrewgreen risk, v3.9.6narrow executable package without higher-risk signals
blahtexmlHomebrewgreen risk, v1.0narrow executable package without higher-risk signals
blitzwaveHomebrewgreen risk, v0.8.0library-like package without higher-risk signals
bowtie2Homebrewgreen risk, v2.5.5narrow executable package without higher-risk signals
breseqHomebrewgreen risk, v0.40.1narrow executable package without higher-risk signals
btllibHomebrewgreen risk, v1.7.8library-like package without higher-risk signals
bwaHomebrewgreen risk, v0.7.19narrow executable package without higher-risk signals
cadicalHomebrewgreen risk, v3.0.0narrow executable package without higher-risk signals
calcHomebrewv2.17.0.0no executable entrypoint in the package index
calcephHomebrewgreen risk, v5.0.0library-like package without higher-risk signals
cbcHomebrewgreen risk, v2.10.13narrow executable package without higher-risk signals
ccfitsHomebrewgreen risk, v2.7library-like package without higher-risk signals
cddlibHomebrewgreen risk, v0.94nnarrow executable package without higher-risk signals
cdiHomebrewgreen risk, v2.6.3narrow executable package without higher-risk signals
cfitsioHomebrewgreen risk, v4.6.4narrow executable package without higher-risk signals
chadwickHomebrewgreen risk, v0.10.0narrow executable package without higher-risk signals
clblasHomebrewgreen risk, v2.12library-like package without higher-risk signals
clblastHomebrewgreen risk, v1.7.0library-like package without higher-risk signals
clhepHomebrewgreen risk, v2.4.7.2library-like package without higher-risk signals
clocHomebrewgreen risk, v2.10narrow executable package without higher-risk signals
clpHomebrewgreen risk, v1.17.11narrow executable package without higher-risk signals
cmatrixHomebrewgreen risk, v2.0narrow executable package without higher-risk signals
colmapHomebrewv4.1.0no executable entrypoint in the package index
corsixthHomebrewgreen risk, v0.69.2narrow executable package without higher-risk signals
cp2kHomebrewgreen risk, v2026.1narrow executable package without higher-risk signals
cromwellHomebrewgreen risk, v92narrow executable package without higher-risk signals
cryptominisatHomebrewgreen risk, v5.14.7narrow executable package without higher-risk signals
cspiceHomebrewgreen risk, v67narrow executable package without higher-risk signals
cutadaptHomebrewgreen risk, v5.2narrow executable package without higher-risk signals
damask-gridHomebrewgreen risk, v3.0.2narrow executable package without higher-risk signals
dataladHomebrewv1.6.0no executable entrypoint in the package index
datamashHomebrewgreen risk, v1.9narrow executable package without higher-risk signals
dcm2niixHomebrewv1.0.20260416no executable entrypoint in the package index
dcmtkHomebrewgreen risk, v3.7.0narrow executable package without higher-risk signals
depqbfHomebrewgreen risk, v6.03narrow executable package without higher-risk signals
diamondHomebrewv2.2.3no executable entrypoint in the package index
diffstatHomebrewgreen risk, v1.69narrow executable package without higher-risk signals
dmtx-utilsHomebrewgreen risk, v0.7.6narrow executable package without higher-risk signals
dopewarsHomebrewgreen risk, v1.6.2narrow executable package without higher-risk signals