macOS
Homebrewverified · 100%
brew install proteinortholocal Homebrew formula metadata
brew
Install proteinortho with Homebrew, apt
Detecting orthologous genes within different species. Version 6.3.6 via Homebrew; verified 2026-06-25.
install
Additional install commands
Linux
Debian aptverified · 92%
sudo apt install proteinorthoDebian stable package indexes · proteinortho · source: deb.debian.org
overview
Package summary
Detecting orthologous genes within different species
Project links
Commands and aliases
- proteinortho
- proteinortho2html.pl
- proteinortho2tree.pl
- proteinortho2xml.pl
- proteinortho6.pl
- proteinortho_cleanupblastgraph
- proteinortho_clustering
- proteinortho_compareProteinorthoGraphs.pl
- proteinortho_do_mcl.pl
- proteinortho_extract_from_graph.pl
- proteinortho_ffadj_mcs.py
- proteinortho_formatUsearch.pl
- proteinortho_grab_proteins.pl
- proteinortho_graphMinusRemovegraph
- proteinortho_history.pl
- proteinortho_singletons.pl
- proteinortho_summary.pl
security posture
Risk level: orange
infrastructure mutation or orchestration signal.
Risk classifier
orange risk · medium confidence · infrastructure
Why
- infrastructure mutation or orchestration signal
Signals
- text:cluster
Install behavior
- No Homebrew post-install hook is recorded in formula metadata.
- Homebrew bottle metadata is available for 8 platform targets.
- Installs with 3 runtime dependencies.
Recommended review
Before unattended agent use, check whether the tool reads plaintext credentials, writes remote state, publishes artifacts, or shells out to plugins.
executables
Installed executables
| Command | Kind | Exposure | Note |
|---|---|---|---|
proteinortho | cli | global executable | |
proteinortho2html.pl | cli | global executable | |
proteinortho2tree.pl | cli | global executable | |
proteinortho2xml.pl | cli | global executable | |
proteinortho6.pl | cli | global executable | |
proteinortho_cleanupblastgraph | cli | global executable | |
proteinortho_clustering | cli | global executable | |
proteinortho_compareProteinorthoGraphs.pl | cli | global executable | |
proteinortho_do_mcl.pl | cli | global executable | |
proteinortho_extract_from_graph.pl | cli | global executable | |
proteinortho_ffadj_mcs.py | cli | global executable | |
proteinortho_formatUsearch.pl | cli | global executable | |
proteinortho_grab_proteins.pl | cli | global executable | |
proteinortho_graphMinusRemovegraph | cli | global executable | |
proteinortho_history.pl | cli | global executable | |
proteinortho_singletons.pl | cli | global executable | |
proteinortho_summary.pl | cli | global executable |
freshness
Version and freshness
These signals separate page generation age, package-manager activity, and upstream release comparison. Version lag is warned only when an evidence URL and comparable versions are present.
page generated2026-07-08
manager version6.3.6
manager updated2026-06-25
local dataok
upstreamnot checked
latest detectednot detected
https://gitlab.com/paulklemm_PHD/proteinortho
- infoRelease/tag comparison is only available for GitHub repositories.https://gitlab.com/paulklemm_PHD/proteinorthonone confidence
install metadata
Package metadata
| Package key | brew:proteinortho |
|---|---|
| Version | 6.3.6 |
| Package manager | Homebrew |
| Package manager page | https://formulae.brew.sh/formula/proteinortho |
| Homepage | https://gitlab.com/paulklemm_PHD/proteinortho |
| Repository | https://gitlab.com/paulklemm_PHD/proteinortho |
| Upstream docs | https://gitlab.com/paulklemm_PHD/proteinortho#readme |
| License | GPL-3.0-or-later |
| Source archive | https://gitlab.com/paulklemm_PHD/proteinortho/-/archive/v6.3.6/proteinortho-v6.3.6.tar.gz |
| Last updated | 2026-06-25T13:38:03+02:00 |
| Pulse | updated |
| Dependencies | diamond, libomp, openblas |
| Bottle | available (on arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, arm64_ventura, sonoma, ventura, x86_64_linux) |
| Homebrew post-install | not defined |
| Service | none declared |
registry facts
Source database details
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | proteinortho |
| Version Scheme | 0 |
| Revision | 0 |
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
source database matches
Other package-manager records
Matches are pulled from external package-manager indexes and kept separate from local Automic Vault package links.
Debian apt95%
proteinortho 6.3.1+dfsg-1
Detection of (Co-)orthologs in large-scale protein analysis
https://gitlab.com/paulklemm_PHD/proteinortho
sudo apt install proteinortho- Section: science
- Architecture: amd64
- 10 dependencies
- normalized package name match
- Matched by: Proteinortho
Ubuntu apt95%
proteinortho 6.3.1+dfsg-1
Detection of (Co-)orthologs in large-scale protein analysis
https://gitlab.com/paulklemm_PHD/proteinortho
sudo apt install proteinortho- Section: universe/science
- Architecture: amd64
- 10 dependencies
- normalized package name match
- Matched by: Proteinortho
source trail
Generated from repository data
This page is generated by av-web from the private package SQLite artifact built by scripts/generate-pkg-sqlite.py.
Combined YAML source
View the package source record on GitHub.
Used sources
- Geiger risk classifier
- Nucleus package database
- av.db category and tag curation
- cross-ecosystem install command graph
- external package-manager database matches
- package relationship graph
- package version freshness
- package-page enrichment