macOS
Homebrewverified · 100%
brew install pamllocal Homebrew formula metadata
brew
Install paml with Homebrew, apt, Nix
Phylogenetic analyses of DNA or protein sequences using maximum likelihood. Version 4.10.10 via Homebrew; verified 2026-05-03.
install
Additional install commands
Linux
Debian aptverified · 92%
sudo apt install pamlDebian stable package indexes · paml · source: deb.debian.org
Nixverified · 92%
nix profile install nixpkgs#pamlnixpkgs package indexes · pkgs/by-name/pa/paml/package.nix · source: api.github.com
overview
Package summary
Phylogenetic analyses of DNA or protein sequences using maximum likelihood
Project links
Commands and aliases
- baseml
- basemlg
- chi2
- codeml
- evolver
- infinitesites
- mcmctree
- pamp
- yn00
security posture
Risk level: green
narrow executable package without higher-risk signals.
Risk classifier
green risk · low confidence · appliance
Why
- narrow executable package without higher-risk signals
Signals
- metadata:no-higher-risk-signals
Install behavior
- No Homebrew post-install hook is recorded in formula metadata.
- Homebrew bottle metadata is available for 6 platform targets.
Recommended review
Before unattended agent use, check whether the tool reads plaintext credentials, writes remote state, publishes artifacts, or shells out to plugins.
executables
Installed executables
| Command | Kind | Exposure | Note |
|---|---|---|---|
baseml | cli | global executable | |
basemlg | cli | global executable | |
chi2 | cli | global executable | |
codeml | cli | global executable | |
evolver | cli | global executable | |
infinitesites | cli | global executable | |
mcmctree | cli | global executable | |
pamp | cli | global executable | |
yn00 | cli | global executable |
freshness
Version and freshness
These signals separate page generation age, package-manager activity, and upstream release comparison. Version lag is warned only when an evidence URL and comparable versions are present.
page generated2026-07-08
manager version4.10.10
manager updated2026-05-03
local dataok
upstreamcurrent
latest detectedv4.10.10
https://github.com/abacus-gene/paml
- okNo freshness warnings were generated.
install metadata
Package metadata
| Package key | brew:paml |
|---|---|
| Version | 4.10.10 |
| Package manager | Homebrew |
| Package manager page | https://formulae.brew.sh/formula/paml |
| Homepage | https://github.com/abacus-gene/paml |
| Repository | https://github.com/abacus-gene/paml |
| Upstream docs | https://github.com/abacus-gene/paml/wiki |
| License | GPL-3.0-only |
| Source archive | https://github.com/abacus-gene/paml/archive/refs/tags/v4.10.10.tar.gz |
| Last updated | 2026-05-03T17:51:16+02:00 |
| Pulse | updated |
| Bottle | available (on arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux) |
| Homebrew post-install | not defined |
| Service | none declared |
registry facts
Source database details
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | paml |
| Version Scheme | 0 |
| Revision | 0 |
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
source database matches
Other package-manager records
Matches are pulled from external package-manager indexes and kept separate from local Automic Vault package links.
Debian apt95%
paml 4.9j+dfsg-6
Phylogenetic Analysis by Maximum Likelihood (PAML)
http://abacus.gene.ucl.ac.uk/software/paml.html
sudo apt install paml- Section: science
- Architecture: amd64
- 1 dependencies
- normalized package name match
- Matched by: Paml
Debian apt95%
paml-doc 4.9j+dfsg-6
Documentation for PAML
http://abacus.gene.ucl.ac.uk/software/paml.html
sudo apt install paml-doc- Section: doc
- Architecture: all
- Source Package: paml
- normalized package name match
- Matched by: Paml
Nix95%
paml
nix profile install nixpkgs#paml- normalized package name match
- Matched by: Paml
Ubuntu apt95%
paml 4.9j+dfsg-4
Phylogenetic Analysis by Maximum Likelihood (PAML)
http://abacus.gene.ucl.ac.uk/software/paml.html
sudo apt install paml- Section: universe/science
- Architecture: amd64
- 1 dependencies
- normalized package name match
- Matched by: Paml
Ubuntu apt95%
paml-doc 4.9j+dfsg-4
Documentation for PAML
http://abacus.gene.ucl.ac.uk/software/paml.html
sudo apt install paml-doc- Section: universe/doc
- Architecture: all
- Source Package: paml
- normalized package name match
- Matched by: Paml
Debian apt92%
evolver 2.70+ds-8
Surface Evolver
https://facstaff.susqu.edu/brakke/evolver/evolver.html
sudo apt install evolver- Section: math
- Architecture: all
- 2 dependencies
- installed executable or alias match
- Matched by: Evolver
Debian apt92%
evolver-doc 2.70+ds-8
Surface Evolver - doc
https://facstaff.susqu.edu/brakke/evolver/evolver.html
sudo apt install evolver-doc- Section: doc
- Architecture: all
- Source Package: evolver
- 2 optional deps
- installed executable or alias match
- Matched by: Evolver
Debian apt92%
evolver-nox 2.70+ds-8+b2
Surface Evolver - with no X support
https://facstaff.susqu.edu/brakke/evolver/evolver.html
sudo apt install evolver-nox- Section: math
- Architecture: amd64
- Source Package: evolver
- 3 dependencies
- 1 provides
- 2 optional deps
- installed executable or alias match
- Matched by: Evolver
Debian apt92%
evolver-ogl 2.70+ds-8+b2
Surface Evolver - with OpenGL display
https://facstaff.susqu.edu/brakke/evolver/evolver.html
sudo apt install evolver-ogl- Section: math
- Architecture: amd64
- Source Package: evolver
- 7 dependencies
- 1 provides
- 2 optional deps
- installed executable or alias match
- Matched by: Evolver
source trail
Generated from repository data
This page is generated by av-web from the private package SQLite artifact built by scripts/generate-pkg-sqlite.py.
Combined YAML source
View the package source record on GitHub.
Used sources
- Geiger risk classifier
- Nucleus package database
- av.db category and tag curation
- cross-ecosystem install command graph
- external package-manager database matches
- package relationship graph
- package version freshness
- package-page enrichment