macOS
Homebrewverifiziert · 100%
brew install minimap2local Homebrew formula metadata
brew
minimap2 mit Homebrew, apt, Nix installieren
Prüfe Installationswege, Executables, Metadaten und Sicherheitshinweise für minimap2 in AI-Agent-Workflows.
Installation
Weitere Installationsbefehle
Linux
Debian aptverifiziert · 92%
sudo apt install libminimap2-devDebian stable package indexes · libminimap2-dev · Quelle: deb.debian.org
Nixverifiziert · 92%
nix profile install nixpkgs#minimap2nixpkgs package indexes · pkgs/by-name/mi/minimap2/package.nix · Quelle: api.github.com
Überblick
Paketzusammenfassung
Versatile pairwise aligner for genomic and spliced nucleotide sequences
Projektlinks
Befehle und Aliase
- minimap2
- sdust
Verlauf
Projektgeschichte und Nutzung
minimap2 is Heng Li's successor to the original minimap, designed for the alignment problems created by long-read sequencing and large genomic assemblies. The 2017 preprint and 2018 Bioinformatics paper present it as a general-purpose pairwise aligner for DNA and long mRNA sequences, motivated by ultra-long reads, full-length transcript reads, and contigs that older aligners could not process efficiently at scale.
Projektgeschichte
Its major technical contribution is being broad without being slow. The paper describes minimap2 as usable for short reads, assembly contigs, noisy long genomic reads, RNA-seq reads, read overlap detection, and full-genome alignment. The implementation combines fast chaining with base-level alignment improvements, including Suzuki-Kasahara dynamic programming, to make long-read and splice-aware alignment practical. The project README highlights the same practical presets: PacBio and Oxford Nanopore genomic reads, Iso-Seq and Nanopore RNA/cDNA alignment, Illumina reads, assembly-to-assembly comparison, and related-species genome alignment.
Wie es verwendet wird
minimap2 became a core bioinformatics command-line tool because long-read sequencing workflows needed one aligner that could cover many data types. It is invoked directly in pipelines and through higher-level platforms, producing SAM or PAF output for downstream tools such as samtools, variant callers, assemblers, and transcript analysis software. In package managers it sits in the genomics CLI niche beside aligners such as BWA-MEM, Bowtie2, BLASR, NGMLR, and GMAP, with its reputation tied to speed, accuracy, and long-read versatility.
Quellen
Sicherheitslage
Noch keine Protected-Tool-Abdeckung gefunden
Für minimap2 wurde kein passendes lokales Secret-Handling-Manifest gefunden. Nucleus-Paketmetadaten bleiben hier veröffentlicht, damit künftige Abdeckung eine stabile Paket-URL hat.
Installationsverhalten
- In den Formelmetadaten ist kein Homebrew-Post-install-Hook erfasst.
- Homebrew-Bottle-Metadaten sind für 6 Plattformziele verfügbar.
Empfohlene Prüfung
Prüfe vor unbeaufsichtigter Agent-Nutzung, ob das Tool Klartext-Credentials liest, Remote-Zustand schreibt, Artefakte veröffentlicht oder Plugins ausführt.
Executables
Installierte Executables
| Befehl | Art | Sichtbarkeit | Hinweis |
|---|---|---|---|
minimap2 | cli | globales Executable | |
sdust | cli | globales Executable |
Aktualität
Version und Aktualität
Diese Signale trennen das Alter der Seitengenerierung, Aktivität des Paketmanagers und Upstream-Release-Vergleich. Versionsrückstand wird nur gemeldet, wenn eine Evidenz-URL und vergleichbare Versionen vorhanden sind.
Seite generiert2026-07-08
Manager-Version2.31
Manager aktualisiert2026-05-20
lokale DatenOK
Upstreamaktuell
neueste erkannte Versionv2.31
https://github.com/lh3/minimap2
- OKEs wurden keine Aktualitätswarnungen generiert.
Installationsmetadaten
Paketmetadaten
| Paketschlüssel | brew:minimap2 |
|---|---|
| Version | 2.31 |
| Paketmanager | Homebrew |
| Paketmanager-Seite | https://formulae.brew.sh/formula/minimap2 |
| Homepage | https://lh3.github.io/minimap2 |
| Repository | https://github.com/lh3/minimap2 |
| Upstream-Dokumentation | https://lh3.github.io/minimap2/minimap2.html |
| Lizenz | MIT |
| Quellarchiv | https://github.com/lh3/minimap2/archive/refs/tags/v2.31.tar.gz |
| Zuletzt aktualisiert | 2026-05-20T00:41:23Z |
| Pulse | updated |
| Bottle | verfügbar (auf arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux) |
| Homebrew post-install | nicht definiert |
| Dienst | keiner deklariert |
Registry-Fakten
Details aus der Quelldatenbank
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | minimap2 |
| Version Scheme | 0 |
| Revision | 0 |
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
Source-Datenbank-Treffer
Andere Paketmanager-Einträge
Treffer stammen aus externen Paketmanager-Indizes und bleiben von lokalen Automic-Vault-Paketlinks getrennt.
Debian apt95%
libminimap2-dev 2.27+dfsg-1+b3
development headers for libminimap
https://github.com/lh3/minimap2
sudo apt install libminimap2-dev- Section: libdevel
- Architecture: amd64
- Source Package: minimap2
- 1 Abhängigkeiten
- normalized package name match
- Abgeglichen nach: Minimap2
Debian apt95%
minimap2 2.27+dfsg-1+b3
versatile pairwise aligner for genomic and spliced nucleotide sequences
https://github.com/lh3/minimap2
sudo apt install minimap2- Section: science
- Architecture: amd64
- Source Package: minimap2
- 2 Abhängigkeiten
- normalized package name match
- Abgeglichen nach: Minimap2
Debian apt95%
python3-mappy 2.27+dfsg-1+b3
Python3 interface minimap2
https://github.com/lh3/minimap2
sudo apt install python3-mappy- Section: python
- Architecture: amd64
- Source Package: minimap2
- 3 Abhängigkeiten
- normalized package name match
- Abgeglichen nach: Minimap2
Nix95%
minimap2
nix profile install nixpkgs#minimap2- normalized package name match
- Abgeglichen nach: Minimap2
Ubuntu apt95%
libminimap2-dev 2.26+dfsg-1build1
development headers for libminimap
https://github.com/lh3/minimap2
sudo apt install libminimap2-dev- Section: universe/libdevel
- Architecture: amd64
- Source Package: minimap2
- 1 Abhängigkeiten
- normalized package name match
- Abgeglichen nach: Minimap2
Ubuntu apt95%
minimap2 2.26+dfsg-1build1
versatile pairwise aligner for genomic and spliced nucleotide sequences
https://github.com/lh3/minimap2
sudo apt install minimap2- Section: universe/science
- Architecture: amd64
- 2 Abhängigkeiten
- normalized package name match
- Abgeglichen nach: Minimap2
Ubuntu apt95%
python3-mappy 2.26+dfsg-1build1
Python3 interface minimap2
https://github.com/lh3/minimap2
sudo apt install python3-mappy- Section: universe/python
- Architecture: amd64
- Source Package: minimap2
- 3 Abhängigkeiten
- normalized package name match
- Abgeglichen nach: Minimap2
Quellspur
Aus Repository-Daten generiert
Diese Seite wird von av-web aus dem privaten Paket-SQLite-Artefakt bereitgestellt, das scripts/generate-pkg-sqlite.py erstellt.
Combined YAML source
View the package source record on GitHub.
Verwendete Quellen
- Geiger risk classifier
- Nucleus package database
- av.db category and tag curation
- cross-ecosystem install command graph
- curated package history
- external package-manager database matches
- package relationship graph
- package version freshness
- package-page enrichment