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brew

abpoa mit Homebrew, apt, Nix installieren

Prüfe Installationswege, Executables, Metadaten und Sicherheitshinweise für abpoa in AI-Agent-Workflows.

InstallationsbefehlSicherheitshinweise

Installation

Weitere Installationsbefehle

macOS

Homebrewverifiziert · 100%
brew install abpoa

local Homebrew formula metadata

Linux

Debian aptverifiziert · 92%
sudo apt install abpoa

Debian stable package indexes · abpoa · Quelle: deb.debian.org

Nixverifiziert · 92%
nix profile install nixpkgs#abpoa

nixpkgs package indexes · pkgs/by-name/ab/abpoa/package.nix · Quelle: api.github.com

Überblick

Paketzusammenfassung

SIMD-based C library for fast partial order alignment using adaptive band

Befehle und Aliase

  • abpoa

Verlauf

Projektgeschichte und Nutzung

abPOA is a C library and command-line tool for adaptive-banded partial-order alignment, multiple sequence alignment, and consensus generation. Package maintainers care about it because it exposes a performance-sensitive bioinformatics primitive as a small buildable C package with command-line, conda, Homebrew, and Python-facing usage.

Projektgeschichte

The first GitHub release, v1.0.0, was published on April 15, 2020. The project was described in Bioinformatics later in 2020 as an SIMD-based C library for fast partial order alignment using adaptive banding, and the upstream README presents it as an extended version of partial-order alignment with adaptive banded dynamic programming and SIMD implementation.

Adoptionsgeschichte

The README documents installation via conda and Homebrew, source builds, prebuilt Linux and macOS binaries, and a pyabpoa Python package. The input metadata also shows distribution packaging in Homebrew, Debian, Nix, and Ubuntu, which is typical for bioinformatics tools that need both reproducible workflows and local command-line execution.

Wie es verwendet wird

abPOA accepts FASTA, FASTQ, and gzip-compressed FASTA/FASTQ input, performs sequence-to-graph alignment, emits consensus FASTA by default, and can also emit row-column MSA, GFA graph output, amino-acid consensus, and graph plots. The README documents global, local, and extension alignment modes plus linear, affine, and convex gap penalties.

Warum Paket-Nerds sich dafür interessieren

The package is significant because it turns a common long-read consensus and MSA building block into a portable SIMD-aware command-line dependency. Its release notes continue to mention packaging-facing work such as pyproject.toml for pyabpoa and SIMD dispatch.

Zeitleiste

  • 2020: First public GitHub release v1.0.0.
  • 2020: Bioinformatics article published for abPOA.
  • 2025: v1.5.4 added SIMD dispatch and Python 3.13 installation fixes.
  • 2026: v1.5.6 added easier incremental MSA and pyproject.toml for pyabpoa.

Related projects

  • The README explicitly frames abPOA as an extension of partial-order alignment and references heaviest bundling for consensus generation. It also ships pyabpoa for Python users and connects to Bioconda and Homebrew packaging for workflow installation.

Sicherheitslage

Risikostufe: grün

library-like package without higher-risk signals.

Risikoklassifikator

grün Risiko · niedrig Konfidenz · appliance

Warum

  • library-like package without higher-risk signals

Signale

  • metadata:library-like

Installationsverhalten

  • In den Formelmetadaten ist kein Homebrew-Post-install-Hook erfasst.
  • Homebrew-Bottle-Metadaten sind für 6 Plattformziele verfügbar.

Empfohlene Prüfung

Prüfe vor unbeaufsichtigter Agent-Nutzung, ob das Tool Klartext-Credentials liest, Remote-Zustand schreibt, Artefakte veröffentlicht oder Plugins ausführt.

Executables

Installierte Executables

BefehlArtSichtbarkeitHinweis
abpoacliglobales Executable

Aktualität

Version und Aktualität

Diese Signale trennen das Alter der Seitengenerierung, Aktivität des Paketmanagers und Upstream-Release-Vergleich. Versionsrückstand wird nur gemeldet, wenn eine Evidenz-URL und vergleichbare Versionen vorhanden sind.

Seite generiert2026-07-08
Manager-Version1.5.6
Manager aktualisiert2026-05-26
lokale DatenOK
Upstreamnot checked
neueste erkannte Versionnicht erkannt

https://github.com/yangao07/abPOA

Installationsmetadaten

Paketmetadaten

Paketschlüsselbrew:abpoa
Version1.5.6
PaketmanagerHomebrew
Paketmanager-Seitehttps://formulae.brew.sh/formula/abpoa
Homepagehttps://github.com/yangao07/abPOA
Repositoryhttps://github.com/yangao07/abPOA
Upstream-Dokumentationhttps://doi.org/10.1093/bioinformatics/btaa963
LizenzMIT
Quellarchivhttps://github.com/yangao07/abPOA/releases/download/v1.5.6/abPOA-v1.5.6.tar.gz
Zuletzt aktualisiert2026-05-26T23:37:46-04:00
Pulseupdated
Bottleverfügbar (auf arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux)
Homebrew post-installnicht definiert
Dienstkeiner deklariert

Registry-Fakten

Details aus der Quelldatenbank

Source DatabaseHomebrew formula API
Taphomebrew/core
Full Nameabpoa
Version Scheme0
Revision0
Head VersionHEAD
Bottle Stable Root URLhttps://ghcr.io/v2/homebrew/core
Deprecatedno
Disabledno
Keg Onlyno
URL Keys
  • head
  • stable

Source-Datenbank-Treffer

Andere Paketmanager-Einträge

Treffer stammen aus externen Paketmanager-Indizes und bleiben von lokalen Automic-Vault-Paketlinks getrennt.

Debian apt95%

abpoa 1.5.3-1+b4

adaptive banded Partial Order Alignment

https://github.com/yangao07/abPOA

sudo apt install abpoa
  • Section: science
  • Architecture: amd64
  • Source Package: abpoa
  • 3 Abhängigkeiten
  • normalized package name match
  • Abgeglichen nach: Abpoa
Debian stable package indexes · deb.debian.org · Debian stable package indexes: abpoa from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Debian apt95%

python3-pyabpoa 1.5.3-1+b4

adaptive banded Partial Order Alignment - python3 module

https://github.com/yangao07/abPOA

sudo apt install python3-pyabpoa
  • Section: python
  • Architecture: amd64
  • Source Package: abpoa
  • 3 Abhängigkeiten
  • normalized package name match
  • Abgeglichen nach: Abpoa
Debian stable package indexes · deb.debian.org · Debian stable package indexes: python3-pyabpoa from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Nix95%

abpoa

nix profile install nixpkgs#abpoa
  • normalized package name match
  • Abgeglichen nach: Abpoa
nixpkgs package indexes · api.github.com · nixpkgs package indexes: pkgs/by-name/ab/abpoa/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1
Ubuntu apt95%

abpoa 1.5.1-1build1

adaptive banded Partial Order Alignment

https://github.com/yangao07/abPOA

sudo apt install abpoa
  • Section: universe/science
  • Architecture: amd64
  • 3 Abhängigkeiten
  • normalized package name match
  • Abgeglichen nach: Abpoa
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: abpoa from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz
Ubuntu apt95%

python3-pyabpoa 1.5.1-1build1

adaptive banded Partial Order Alignment - python3 module

https://github.com/yangao07/abPOA

sudo apt install python3-pyabpoa
  • Section: universe/python
  • Architecture: amd64
  • Source Package: abpoa
  • 3 Abhängigkeiten
  • normalized package name match
  • Abgeglichen nach: Abpoa
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: python3-pyabpoa from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz

Paketgraph

Links stammen aus dem lokalen Paketbeziehungsgraph, Ergänzungen, Abhängigkeitskanten, Ecosystem-Matches und Paket-Hub-Mitgliedschaft.

Gleicher Workflow

  • diamondShares av.db curated category or tags: bioinformatics, cli, science, sequence-alignment.
  • mafftShares av.db curated category or tags: bioinformatics, cli, science, sequence-alignment.
  • minimap2Shares av.db curated category or tags: bioinformatics, cli, science, sequence-alignment.
  • spoof-macShares av.db curated category or tags: bioinformatics, cli, partial-order-alignment, science, sequence-alignment.
  • blastShares av.db curated category or tags: bioinformatics, cli, science, sequence-alignment.
  • bwaShares av.db curated category or tags: bioinformatics, cli, science, sequence-alignment.

Quellspur

Aus Repository-Daten generiert

Diese Seite wird von av-web aus dem privaten Paket-SQLite-Artefakt bereitgestellt, das scripts/generate-pkg-sqlite.py erstellt.

Verwendete Quellen

  • Geiger risk classifier
  • Nucleus package database
  • av.db category and tag curation
  • cross-ecosystem install command graph
  • curated package history
  • external package-manager database matches
  • package relationship graph
  • package version freshness
  • package-page enrichment