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brew

lastz mit Homebrew, apt installieren

Prüfe Installationswege, Executables, Metadaten und Sicherheitshinweise für lastz in AI-Agent-Workflows.

InstallationsbefehlSicherheitshinweise

Installation

Weitere Installationsbefehle

macOS

Homebrewverifiziert · 100%
brew install lastz

local Homebrew formula metadata

Linux

Debian aptverifiziert · 92%
sudo apt install lastz

Debian stable package indexes · lastz · Quelle: deb.debian.org

Überblick

Paketzusammenfassung

Pairwise aligner for DNA sequences

Befehle und Aliase

  • lastz
  • lastz_D

Verlauf

Projektgeschichte und Nutzung

LASTZ is a pairwise DNA sequence aligner and the successor-style, command-line-compatible replacement for BLASTZ. It is used for comparing genomic sequences and can emit formats used by genome-alignment pipelines, including LAV, AXT, MAF, SAM, CIGAR, PAF, and human-readable output.

Projektgeschichte

The official documentation presents LASTZ as a drop-in replacement for BLASTZ that preserves BLASTZ command-line syntax while adding options and correcting behavioral problems. Its documentation includes an explicit section on differences from BLASTZ, such as fixes to alignment-boundary behavior, premature termination, chaining overflow, ambiguity handling, and additional output formats.

The GitHub repository was created on 2016-08-11 and is described by the project as the official working branch, with users encouraged to use tagged releases. Tagged 1.04.x releases continued the project's bioinformatics-maintenance role after the BLASTZ era.

Adoptionsgeschichte

LASTZ is packaged in Homebrew, Debian, and Ubuntu and appears in high-performance-computing genomics documentation because pairwise whole-genome and read-to-reference alignment remain recurring batch-computing tasks. Its BLASTZ compatibility helped existing workflows migrate without rewriting every command line.

The adoption pattern is typical of scientific command-line tools: a stable executable, long HTML manual, tagged source releases, and distribution packages matter more than a polished end-user application interface.

Wie es verwendet wird

Users run `lastz` with target and query sequences plus scoring, seeding, masking, chaining, and output-format options. The manual's examples cover comparing chromosomes, aligning shotgun reads to a chromosome, self-alignment, and working with seed, HSP, gapped-alignment, and chaining stages.

Warum Paket-Nerds sich dafür interessieren

LASTZ is package-nerd significant because it is a specialized scientific CLI whose real value is reproducibility: exact versions, tagged releases, and package-manager availability let genomics pipelines rerun large alignments with known behavior.

It also illustrates a common packaging problem in bioinformatics: preserving old command-line compatibility while fixing algorithmic bugs and adding formats needed by newer workflows.

Zeitleiste

  • 2016-08-11: Official GitHub repository created.
  • 2017-04-12: Tag 1.04.00 appears in the public GitHub tag set.
  • 2022-01-11: Tag 1.04.52 appears in the public GitHub tag set.
  • 2026-05-20: GitHub repository metadata records activity on the official repository.

Related projects

  • LASTZ is directly related to BLASTZ, the Miller Lab alignment tools, and downstream genome-alignment formats and pipelines that consume LAV, AXT, MAF, SAM, CIGAR, or PAF output.

Sicherheitslage

Risikostufe: grün

narrow executable package without higher-risk signals.

Risikoklassifikator

grün Risiko · niedrig Konfidenz · appliance

Warum

  • narrow executable package without higher-risk signals

Signale

  • metadata:no-higher-risk-signals

Installationsverhalten

  • In den Formelmetadaten ist kein Homebrew-Post-install-Hook erfasst.
  • Homebrew-Bottle-Metadaten sind für 8 Plattformziele verfügbar.

Empfohlene Prüfung

Prüfe vor unbeaufsichtigter Agent-Nutzung, ob das Tool Klartext-Credentials liest, Remote-Zustand schreibt, Artefakte veröffentlicht oder Plugins ausführt.

Executables

Installierte Executables

BefehlArtSichtbarkeitHinweis
lastzcliglobales Executable
lastz_Dcliglobales Executable

Aktualität

Version und Aktualität

Diese Signale trennen das Alter der Seitengenerierung, Aktivität des Paketmanagers und Upstream-Release-Vergleich. Versionsrückstand wird nur gemeldet, wenn eine Evidenz-URL und vergleichbare Versionen vorhanden sind.

Seite generiert2026-07-08
Manager-Version1.04.52
Manager aktualisiert
lokale DatenOK
Upstreamaktuell
neueste erkannte Version1.04.52

https://github.com/lastz/lastz

  • InfoNo package-manager update timestamp was available.niedrig Konfidenz

Installationsmetadaten

Paketmetadaten

Paketschlüsselbrew:lastz
Version1.04.52
PaketmanagerHomebrew
Paketmanager-Seitehttps://formulae.brew.sh/formula/lastz
Homepagehttps://lastz.github.io/lastz/
Repositoryhttps://github.com/lastz/lastz
Upstream-Dokumentationhttps://lastz.github.io/lastz
LizenzMIT
Quellarchivhttps://github.com/lastz/lastz/archive/refs/tags/1.04.52.tar.gz
Bottleverfügbar (auf arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, arm64_ventura, sonoma, ventura, x86_64_linux)
Homebrew post-installnicht definiert
Dienstkeiner deklariert

Registry-Fakten

Details aus der Quelldatenbank

Source DatabaseHomebrew formula API
Taphomebrew/core
Full Namelastz
Version Scheme0
Revision0
Head VersionHEAD
Bottle Stable Root URLhttps://ghcr.io/v2/homebrew/core
Deprecatedno
Disabledno
Keg Onlyno
URL Keys
  • head
  • stable

Source-Datenbank-Treffer

Andere Paketmanager-Einträge

Treffer stammen aus externen Paketmanager-Indizes und bleiben von lokalen Automic-Vault-Paketlinks getrennt.

Debian apt95%

lastz 1.04.22-2

pairwise aligning DNA sequences

https://github.com/lastz/lastz

sudo apt install lastz
  • Section: science
  • Architecture: amd64
  • 1 Abhängigkeiten
  • normalized package name match
  • Abgeglichen nach: Lastz
Debian stable package indexes · deb.debian.org · Debian stable package indexes: lastz from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Debian apt95%

lastz-examples 1.04.22-2

pairwise aligning DNA sequences (examples and test scripts)

https://github.com/lastz/lastz

sudo apt install lastz-examples
  • Section: science
  • Architecture: all
  • Source Package: lastz
  • 1 Abhängigkeiten
  • normalized package name match
  • Abgeglichen nach: Lastz
Debian stable package indexes · deb.debian.org · Debian stable package indexes: lastz-examples from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Ubuntu apt95%

lastz 1.04.22-2

pairwise aligning DNA sequences

https://github.com/lastz/lastz

sudo apt install lastz
  • Section: universe/science
  • Architecture: amd64
  • 1 Abhängigkeiten
  • normalized package name match
  • Abgeglichen nach: Lastz
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: lastz from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz
Ubuntu apt95%

lastz-examples 1.04.22-2

pairwise aligning DNA sequences (examples and test scripts)

https://github.com/lastz/lastz

sudo apt install lastz-examples
  • Section: universe/science
  • Architecture: all
  • Source Package: lastz
  • 1 Abhängigkeiten
  • normalized package name match
  • Abgeglichen nach: Lastz
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: lastz-examples from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz

Paketgraph

Links stammen aus dem lokalen Paketbeziehungsgraph, Ergänzungen, Abhängigkeitskanten, Ecosystem-Matches und Paket-Hub-Mitgliedschaft.

Gleicher Workflow

  • minimap2Shares av.db curated category or tags: bioinformatics, cli, dna, genomics, science.
  • mummerShares av.db curated category or tags: bioinformatics, cli, dna, genomics, science.
  • bbtoolsShares av.db curated category or tags: bioinformatics, cli, dna, genomics, science.
  • blastShares av.db curated category or tags: bioinformatics, cli, genomics, science, sequence-alignment.
  • breseqShares av.db curated category or tags: bioinformatics, cli, dna, genomics, science.
  • bwaShares av.db curated category or tags: bioinformatics, cli, dna, science, sequence-alignment.

Quellspur

Aus Repository-Daten generiert

Diese Seite wird von av-web aus dem privaten Paket-SQLite-Artefakt bereitgestellt, das scripts/generate-pkg-sqlite.py erstellt.

Verwendete Quellen

  • Geiger risk classifier
  • Nucleus package database
  • av.db category and tag curation
  • cross-ecosystem install command graph
  • curated package history
  • external package-manager database matches
  • package relationship graph
  • package version freshness
  • package-page enrichment