macOS
Homebrewverifiziert · 100%
brew install genometoolslocal Homebrew formula metadata
brew
genometools mit Homebrew, apt installieren
Prüfe Installationswege, Executables, Metadaten und Sicherheitshinweise für genometools in AI-Agent-Workflows.
Installation
Weitere Installationsbefehle
Linux
Debian aptverifiziert · 92%
sudo apt install genometoolsDebian stable package indexes · genometools · Quelle: deb.debian.org
Überblick
Paketzusammenfassung
Versatile open source genome analysis software
Projektlinks
Befehle und Aliase
- genometools-config
Verlauf
Projektgeschichte und Nutzung
GenomeTools is an open source genome informatics system centered on a single gt command and the libgenometools C library. It collects command-line tools, APIs, and published bioinformatics components for structured genome annotations, sequence analysis, annotation visualization, and related workflows.
Projektgeschichte
The project archive shows public source tarballs beginning with the 0.6.x series in 2007 and a 1.0.0 release later that year. The official overview describes the system as a collection of bioinformatics tools combined into one binary and based on libgenometools, with development credited to Gordon Gremme, Sascha Steinbiss, Stefan Kurtz, and contributors at the University of Hamburg's Genome Informatics group.
The 2013 GenomeTools publication framed the project as a comprehensive software library for efficient processing of structured genome annotations. Around that core, the official site lists separately published components such as LTRharvest, Tallymer, AnnotationSketch, LTRdigest, GtEncseq, Readjoiner, and related tools built on the same library.
Adoptionsgeschichte
GenomeTools gained significance through bioinformatics publications and through its packaging as a reusable command-line suite rather than a single-purpose script. Its official site points to manuals, manpage-style tool documentation, a C API, Lua-based gtscript documentation, and a GFF3 validator, which made it useful both for end users and developers building genome-annotation workflows.
Wie es verwendet wird
Practitioners use GenomeTools for tasks such as validating and processing GFF3, drawing genome annotations, finding LTR retrotransposons, counting or indexing sequence features, assembling reads, and scripting analyses around the gt command. Developers can use libgenometools and the documented C API when command-line composition is not enough.
Warum Paket-Nerds sich dafür interessieren
GenomeTools is a good example of scientific software that package managers preserve because reproducible research workflows depend on exact command-line behavior, compiled C libraries, and long-lived manual pages.
Zeitleiste
- 2007: the project archive listed the 0.6.x series and 1.0.0 tarballs.
- 2008: the official site listed published GenomeTools components including LTRharvest and Tallymer.
- 2013: the GenomeTools software-library paper appeared in IEEE/ACM Transactions on Computational Biology and Bioinformatics.
- 2021: the project archive listed the 1.6.2 tarball.
Related projects
- Related GenomeTools components and adjacent projects include libgenometools, gt, AnnotationSketch, LTRharvest, LTRdigest, Tallymer, GtEncseq, Readjoiner, GenomeThreader, and GFF3 validation tooling.
Quellen
Sicherheitslage
Risikostufe: grün
narrow executable package without higher-risk signals.
Risikoklassifikator
grün Risiko · niedrig Konfidenz · appliance
Warum
- narrow executable package without higher-risk signals
Signale
- metadata:no-higher-risk-signals
Installationsverhalten
- In den Formelmetadaten ist kein Homebrew-Post-install-Hook erfasst.
- Homebrew-Bottle-Metadaten sind für 6 Plattformziele verfügbar.
- Installiert mit 6 Laufzeitabhängigkeiten.
- Build-Metadaten listen 2 Build-Abhängigkeiten.
Empfohlene Prüfung
Prüfe vor unbeaufsichtigter Agent-Nutzung, ob das Tool Klartext-Credentials liest, Remote-Zustand schreibt, Artefakte veröffentlicht oder Plugins ausführt.
Executables
Installierte Executables
| Befehl | Art | Sichtbarkeit | Hinweis |
|---|---|---|---|
genometools-config | cli | globales Executable |
Aktualität
Version und Aktualität
Diese Signale trennen das Alter der Seitengenerierung, Aktivität des Paketmanagers und Upstream-Release-Vergleich. Versionsrückstand wird nur gemeldet, wenn eine Evidenz-URL und vergleichbare Versionen vorhanden sind.
Seite generiert2026-07-10
Manager-Version1.6.6
Manager aktualisiert
lokale DatenOK
Upstreamaktuell
neueste erkannte Versionv1.6.6
https://github.com/genometools/genometools
- InfoNo package-manager update timestamp was available.niedrig Konfidenz
Installationsmetadaten
Paketmetadaten
| Paketschlüssel | brew:genometools |
|---|---|
| Version | 1.6.6 |
| Paketmanager | Homebrew |
| Paketmanager-Seite | https://formulae.brew.sh/formula/genometools |
| Homepage | https://genometools.org/ |
| Repository | https://github.com/genometools/genometools |
| Upstream-Dokumentation | https://genometools.org/documentation.html |
| Lizenz | ISC |
| Quellarchiv | https://github.com/genometools/genometools/archive/refs/tags/v1.6.6.tar.gz |
| Abhängigkeiten | cairo, gettext, glib, harfbuzz, pango, tre |
| Build-Abhängigkeiten | pkgconf, python@3.14 |
| Von macOS bereitgestellte Bibliotheken | bzip2, expat, sqlite |
| Bottle | verfügbar (auf arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux) |
| Homebrew post-install | nicht definiert |
| Dienst | keiner deklariert |
Registry-Fakten
Details aus der Quelldatenbank
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | genometools |
| Version Scheme | 0 |
| Revision | 0 |
| Head Version | HEAD |
| Conflicts With |
|
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
Source-Datenbank-Treffer
Andere Paketmanager-Einträge
Treffer stammen aus externen Paketmanager-Indizes und bleiben von lokalen Automic-Vault-Paketlinks getrennt.
Debian apt95%
genometools 1.6.5+ds-2.2
versatile genome analysis toolkit
sudo apt install genometools- Section: science
- Architecture: amd64
- 15 Abhängigkeiten
- normalized package name match
- Abgeglichen nach: Genometools
Debian apt95%
genometools-common 1.6.5+ds-2.2
shared data files for GenomeTools
sudo apt install genometools-common- Section: science
- Architecture: all
- Source Package: genometools
- 9 Abhängigkeiten
- normalized package name match
- Abgeglichen nach: Genometools
Debian apt95%
genometools-doc 1.6.5+ds-2.2
documentation for GenomeTools
sudo apt install genometools-doc- Section: doc
- Architecture: all
- Source Package: genometools
- normalized package name match
- Abgeglichen nach: Genometools
Debian apt95%
libgenometools0-dev 1.6.5+ds-2.2
development files for GenomeTools
sudo apt install libgenometools0-dev- Section: libdevel
- Architecture: amd64
- Source Package: genometools
- 1 Abhängigkeiten
- normalized package name match
- Abgeglichen nach: Genometools
Debian apt95%
libgenometools0t64 1.6.5+ds-2.2
versatile genome analysis library
sudo apt install libgenometools0t64- Section: libs
- Architecture: amd64
- Source Package: genometools
- 13 Abhängigkeiten
- 1 stellt bereit
- normalized package name match
- Abgeglichen nach: Genometools
Debian apt95%
python3-genometools 1.6.5+ds-2.2
Python3 bindings for genometools
sudo apt install python3-genometools- Section: python
- Architecture: all
- Source Package: genometools
- 2 Abhängigkeiten
- normalized package name match
- Abgeglichen nach: Genometools
Ubuntu apt95%
genometools 1.6.5+ds-2.1ubuntu2
versatile genome analysis toolkit
sudo apt install genometools- Section: universe/science
- Architecture: amd64
- 15 Abhängigkeiten
- normalized package name match
- Abgeglichen nach: Genometools
Ubuntu apt95%
genometools-common 1.6.5+ds-2.1ubuntu2
shared data files for GenomeTools
sudo apt install genometools-common- Section: universe/science
- Architecture: all
- Source Package: genometools
- 9 Abhängigkeiten
- normalized package name match
- Abgeglichen nach: Genometools
Ubuntu apt95%
genometools-doc 1.6.5+ds-2.1ubuntu2
documentation for GenomeTools
sudo apt install genometools-doc- Section: universe/doc
- Architecture: all
- Source Package: genometools
- normalized package name match
- Abgeglichen nach: Genometools
Ubuntu apt95%
libgenometools0-dev 1.6.5+ds-2.1ubuntu2
development files for GenomeTools
sudo apt install libgenometools0-dev- Section: universe/libdevel
- Architecture: amd64
- Source Package: genometools
- 1 Abhängigkeiten
- normalized package name match
- Abgeglichen nach: Genometools
Ubuntu apt95%
libgenometools0t64 1.6.5+ds-2.1ubuntu2
versatile genome analysis library
sudo apt install libgenometools0t64- Section: universe/libs
- Architecture: amd64
- Source Package: genometools
- 13 Abhängigkeiten
- 1 stellt bereit
- normalized package name match
- Abgeglichen nach: Genometools
Ubuntu apt95%
python3-genometools 1.6.5+ds-2.1ubuntu2
Python3 bindings for genometools
sudo apt install python3-genometools- Section: universe/python
- Architecture: all
- Source Package: genometools
- 2 Abhängigkeiten
- normalized package name match
- Abgeglichen nach: Genometools
Quellspur
Aus Repository-Daten generiert
Diese Seite wird von av-web aus dem privaten Paket-SQLite-Artefakt bereitgestellt, das scripts/generate-pkg-sqlite.py erstellt.
Combined YAML source
View the package source record on GitHub.
Verwendete Quellen
- Geiger risk classifier
- Nucleus package database
- av.db category and tag curation
- cross-ecosystem install command graph
- curated package history
- external package-manager database matches
- package relationship graph
- package version freshness
- package-page enrichment