macOS
Homebrewverifiziert · 100%
brew install abricatelocal Homebrew formula metadata
brew
abricate mit Homebrew installieren
Prüfe Installationswege, Executables, Metadaten und Sicherheitshinweise für abricate in AI-Agent-Workflows.
Installation
Weitere Installationsbefehle
Überblick
Paketzusammenfassung
Find antimicrobial resistance and virulence genes in contigs
Projektlinks
Befehle und Aliase
- abricate
- abricate-get_db
Verlauf
Projektgeschichte und Nutzung
ABRicate is a Perl command-line tool for mass screening assembled contigs against antimicrobial-resistance and virulence-gene databases. It matters to package maintainers because it wraps BLAST+, database setup, and summary reporting into a familiar Unix bioinformatics command.
Projektgeschichte
The first GitHub release, v0.1, was published as 'Debut' on April 2, 2015. The README describes the project as mass screening of contigs for antimicrobial resistance or virulence genes and explains that the name combines the common acronym ABR, for antibiotic resistance, with an English-verb-like form.
Adoptionsgeschichte
ABRicate became useful in workflow packaging because the README documents Bioconda installation, source installation, dependency checks, database setup, and operation through a single abricate command. The current Homebrew input metadata shows it packaged for Homebrew, while upstream also advertises Bioconda download badges.
Wie es verwendet wird
The tool screens assemblies, not raw FASTQ reads, and reports gene hits with coverage, identity, database, accession, product, and resistance fields. It can process many files, read a file-of-filenames, summarize reports into a presence/absence matrix, update bundled databases, and build custom nucleotide databases.
Warum Paket-Nerds sich dafür interessieren
ABRicate is a classic bioinformatics packaging target: a Perl entry point with external command dependencies, bundled or downloadable reference databases, and a check/setup workflow that packagers and workflow engines can exercise after install. Its release history also tracks database refreshes and CI migration.
Zeitleiste
- 2015: v0.1 Debut release.
- 2020: v1.0.0 added file-of-filenames scanning, defaults around coverage/identity thresholds, MEGARES docs, and NCBI/CARD database support.
- 2025: v1.2.0 refreshed databases, moved CI to GitHub Actions, switched download code to Perl File::Fetch, and improved docs.
- 2026: v1.4.0 added a UPEC/ExPEC virulence-factors database and updated NCBI AMR data.
Related projects
- The README points users to ARIBA, ResFinder, RGI, SRST2, and AMRFinderPlus when ABRicate is not the right fit. It also bundles or references databases including NCBI AMRFinderPlus, CARD, ResFinder, ARG-ANNOT, MEGARES, PlasmidFinder, VFDB, VICTORS, BacMet, and UPEC/ExPEC VF.
Quellen
- https://github.com/tseemann/abricate#readme
- https://github.com/tseemann/abricate/releases
- input source_facts.package-manager
Sicherheitslage
Risikostufe: grün
narrow executable package without higher-risk signals.
Risikoklassifikator
grün Risiko · niedrig Konfidenz · appliance
Warum
- narrow executable package without higher-risk signals
Signale
- metadata:no-higher-risk-signals
Installationsverhalten
- Homebrew deklariert einen Post-install-Hook für diese Formel.
- Homebrew-Bottle-Metadaten sind für 6 Plattformziele verfügbar.
- Installiert mit 3 Laufzeitabhängigkeiten.
Empfohlene Prüfung
Prüfe vor unbeaufsichtigter Agent-Nutzung, ob das Tool Klartext-Credentials liest, Remote-Zustand schreibt, Artefakte veröffentlicht oder Plugins ausführt.
Executables
Installierte Executables
| Befehl | Art | Sichtbarkeit | Hinweis |
|---|---|---|---|
abricate | cli | globales Executable | |
abricate-get_db | cli | globales Executable |
Aktualität
Version und Aktualität
Diese Signale trennen das Alter der Seitengenerierung, Aktivität des Paketmanagers und Upstream-Release-Vergleich. Versionsrückstand wird nur gemeldet, wenn eine Evidenz-URL und vergleichbare Versionen vorhanden sind.
Seite generiert2026-07-10
Manager-Version1.4.0
Manager aktualisiert2026-06-22
lokale DatenOK
Upstreamaktuell
neueste erkannte Versionv1.4.0
https://github.com/tseemann/abricate
- OKEs wurden keine Aktualitätswarnungen generiert.
Installationsmetadaten
Paketmetadaten
| Paketschlüssel | brew:abricate |
|---|---|
| Version | 1.4.0 |
| Paketmanager | Homebrew |
| Paketmanager-Seite | https://formulae.brew.sh/formula/abricate |
| Homepage | https://github.com/tseemann/abricate |
| Repository | https://github.com/tseemann/abricate |
| Upstream-Dokumentation | https://github.com/tseemann/abricate#readme |
| Lizenz | GPL-2.0-only |
| Quellarchiv | https://github.com/tseemann/abricate/archive/refs/tags/v1.4.0.tar.gz |
| Zuletzt aktualisiert | 2026-06-22T14:02:40-07:00 |
| Pulse | updated |
| Abhängigkeiten | any2fasta, bioperl, blast |
| Von macOS bereitgestellte Bibliotheken | perl, unzip |
| Bottle | verfügbar (auf arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux) |
| Homebrew post-install | definiert |
| Dienst | keiner deklariert |
Registry-Fakten
Details aus der Quelldatenbank
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | abricate |
| Version Scheme | 0 |
| Revision | 0 |
| Head Version | HEAD |
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
Quellspur
Aus Repository-Daten generiert
Diese Seite wird von av-web aus dem privaten Paket-SQLite-Artefakt bereitgestellt, das scripts/generate-pkg-sqlite.py erstellt.
Combined YAML source
View the package source record on GitHub.
Verwendete Quellen
- Geiger risk classifier
- Nucleus package database
- av.db category and tag curation
- cross-ecosystem install command graph
- curated package history
- package relationship graph
- package version freshness
- package-page enrichment