macOS
Homebrewverifiziert · 100%
brew install adapterremovallocal Homebrew formula metadata
brew
adapterremoval mit Homebrew, apt installieren
Prüfe Installationswege, Executables, Metadaten und Sicherheitshinweise für adapterremoval in AI-Agent-Workflows.
Installation
Weitere Installationsbefehle
Linux
Debian aptverifiziert · 92%
sudo apt install adapterremovalDebian stable package indexes · adapterremoval · Quelle: deb.debian.org
Überblick
Paketzusammenfassung
Rapid adapter trimming, identification, and read merging
Projektlinks
Befehle und Aliase
- adapterremoval3
Verlauf
Projektgeschichte und Nutzung
AdapterRemoval is a bioinformatics command-line tool for trimming adapter sequences, trimming low-quality bases, merging overlapping paired-end reads, demultiplexing barcoded reads, and producing sequencing QC reports.
Projektgeschichte
The README cites the original AdapterRemoval publication by Lindgreen in 2012 and the AdapterRemoval v2 paper by Schubert, Lindgreen, and Orlando in 2016. Version 3 is described as a major revision of version 2 focused on simpler defaults, more features, and higher throughput.
The GitHub repository was created in 2014 and now publishes the `adapterremoval3` command with documentation hosted on Read the Docs.
Adoptionsgeschichte
AdapterRemoval became a common sequencing utility because adapter trimming and read merging are routine preprocessing steps for high-throughput sequencing FASTQ data. Its README notes precompiled binaries for Linux, macOS, and Windows, and the supplied input lists Homebrew, Debian, and Ubuntu packages.
Wie es verwendet wird
Users run `adapterremoval3` with input FASTQ files and an output prefix; default behavior can automatically detect adapters, trim low-quality bases, filter reads, write compressed FASTQ, and generate HTML and JSON reports.
Warum Paket-Nerds sich dafür interessieren
For package maintainers, AdapterRemoval is a good example of a scientific CLI where reproducibility, CPU-specific acceleration, compression libraries, and manpage/docs installation all matter. Version 3 adds SIMD acceleration and broader platform packaging concerns.
Zeitleiste
- 2012: Original AdapterRemoval publication appeared in BMC Research Notes.
- 2014: GitHub repository `MikkelSchubert/adapterremoval` was created.
- 2016: AdapterRemoval v2 paper described rapid adapter trimming, identification, and read merging.
- 2022: First AdapterRemoval v3 alpha release was published.
- 2026: AdapterRemoval v3.0.0 was published.
Related projects
- Related tools and domains include FASTQ preprocessing pipelines, adapter trimming utilities, Illumina sequencing workflows, SAM/BAM output handling, and QC report generators.
Quellen
Sicherheitslage
Noch keine Protected-Tool-Abdeckung gefunden
Für adapterremoval wurde kein passendes lokales Secret-Handling-Manifest gefunden. Nucleus-Paketmetadaten bleiben hier veröffentlicht, damit künftige Abdeckung eine stabile Paket-URL hat.
Installationsverhalten
- In den Formelmetadaten ist kein Homebrew-Post-install-Hook erfasst.
- Homebrew-Bottle-Metadaten sind für 6 Plattformziele verfügbar.
- Installiert mit 2 Laufzeitabhängigkeiten.
- Build-Metadaten listen 4 Build-Abhängigkeiten.
Empfohlene Prüfung
Prüfe vor unbeaufsichtigter Agent-Nutzung, ob das Tool Klartext-Credentials liest, Remote-Zustand schreibt, Artefakte veröffentlicht oder Plugins ausführt.
Executables
Installierte Executables
| Befehl | Art | Sichtbarkeit | Hinweis |
|---|---|---|---|
adapterremoval3 | cli | globales Executable |
Aktualität
Version und Aktualität
Diese Signale trennen das Alter der Seitengenerierung, Aktivität des Paketmanagers und Upstream-Release-Vergleich. Versionsrückstand wird nur gemeldet, wenn eine Evidenz-URL und vergleichbare Versionen vorhanden sind.
Seite generiert2026-07-10
Manager-Version3.0.1
Manager aktualisiert2026-07-02
lokale DatenOK
Upstreamaktuell
neueste erkannte Versionv3.0.1
https://github.com/MikkelSchubert/adapterremoval
- OKEs wurden keine Aktualitätswarnungen generiert.
Installationsmetadaten
Paketmetadaten
| Paketschlüssel | brew:adapterremoval |
|---|---|
| Version | 3.0.1 |
| Paketmanager | Homebrew |
| Paketmanager-Seite | https://formulae.brew.sh/formula/adapterremoval |
| Homepage | https://github.com/MikkelSchubert/adapterremoval |
| Repository | https://github.com/MikkelSchubert/adapterremoval |
| Upstream-Dokumentation | https://adapterremoval.readthedocs.io/ |
| Lizenz | GPL-3.0-or-later |
| Quellarchiv | https://github.com/MikkelSchubert/adapterremoval/archive/refs/tags/v3.0.1.tar.gz |
| Zuletzt aktualisiert | 2026-07-02T12:16:02Z |
| Pulse | updated |
| Abhängigkeiten | isa-l, libdeflate |
| Build-Abhängigkeiten | meson, ninja, pkgconf, sphinx-doc |
| Bottle | verfügbar (auf arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux) |
| Homebrew post-install | nicht definiert |
| Dienst | keiner deklariert |
Registry-Fakten
Details aus der Quelldatenbank
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | adapterremoval |
| Version Scheme | 0 |
| Revision | 0 |
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
Source-Datenbank-Treffer
Andere Paketmanager-Einträge
Treffer stammen aus externen Paketmanager-Indizes und bleiben von lokalen Automic-Vault-Paketlinks getrennt.
Debian apt95%
adapterremoval 2.3.4-1
rapid adapter trimming, identification, and read merging of gene sequences
https://github.com/MikkelSchubert/adapterremoval
sudo apt install adapterremoval- Section: science
- Architecture: amd64
- 5 Abhängigkeiten
- normalized package name match
- Abgeglichen nach: Adapterremoval
Debian apt95%
adapterremoval-examples 2.3.4-1
rapid adapter trimming, identification, and read merging (example data)
https://github.com/MikkelSchubert/adapterremoval
sudo apt install adapterremoval-examples- Section: science
- Architecture: all
- Source Package: adapterremoval
- normalized package name match
- Abgeglichen nach: Adapterremoval
Ubuntu apt95%
adapterremoval 2.3.3-2
rapid adapter trimming, identification, and read merging of gene sequences
https://github.com/MikkelSchubert/adapterremoval
sudo apt install adapterremoval- Section: universe/science
- Architecture: amd64
- 5 Abhängigkeiten
- normalized package name match
- Abgeglichen nach: Adapterremoval
Ubuntu apt95%
adapterremoval-examples 2.3.3-2
rapid adapter trimming, identification, and read merging (example data)
https://github.com/MikkelSchubert/adapterremoval
sudo apt install adapterremoval-examples- Section: universe/science
- Architecture: all
- Source Package: adapterremoval
- normalized package name match
- Abgeglichen nach: Adapterremoval
Quellspur
Aus Repository-Daten generiert
Diese Seite wird von av-web aus dem privaten Paket-SQLite-Artefakt bereitgestellt, das scripts/generate-pkg-sqlite.py erstellt.
Combined YAML source
View the package source record on GitHub.
Verwendete Quellen
- Geiger risk classifier
- Nucleus package database
- av.db category and tag curation
- cross-ecosystem install command graph
- curated package history
- external package-manager database matches
- package relationship graph
- package version freshness
- package-page enrichment