macOS
Homebrewverifiziert · 100%
brew install sylphlocal Homebrew formula metadata
brew
sylph mit Homebrew installieren
Prüfe Installationswege, Executables, Metadaten und Sicherheitshinweise für sylph in AI-Agent-Workflows.
Installation
Weitere Installationsbefehle
Überblick
Paketzusammenfassung
Ultrafast taxonomic profiling and genome querying for metagenomic samples
Projektlinks
Befehle und Aliase
- sylph
Verlauf
Projektgeschichte und Nutzung
sylph is a Rust command-line tool for fast metagenomic profiling and containment average nucleotide identity querying from shotgun sequencing samples. It is packaged for scientists who want a small executable that can query or profile large genome databases quickly from the shell.
Projektgeschichte
The official documentation describes sylph as a program for metagenomic profiling and containment ANI querying. Its core method uses k-mer containment with a statistical technique for low-coverage genomes, and the documentation cites the 2024 Nature Biotechnology paper by Jim Shaw and Yun William Yu.
Adoptionsgeschichte
The upstream README and documentation document installation through Bioconda, source builds with Rust/Cargo, and prebuilt x86-64 Linux binaries; the input package facts show Homebrew packaging as well. That mix reflects a bioinformatics CLI moving through both scientific package channels and general-purpose developer package managers.
Wie es verwendet wird
Common usage is to run sylph profile against a prebuilt or custom database, such as GTDB, with paired-end or single-end FASTQ files, or to run ANI querying to test whether a sample contains a genome related to a queried reference. The docs emphasize fast multi-sample profiling, custom databases, prebuilt databases, and support for short or long reads.
Warum Paket-Nerds sich dafür interessieren
Package nerds care because sylph is a modern scientific CLI distributed as a Rust binary: it needs reproducible installation, large external databases, predictable CPU/RAM behavior, and channels such as Bioconda and Homebrew to reach different user communities.
Zeitleiste
- 2024: Official documentation cites the sylph Nature Biotechnology paper by Jim Shaw and Yun William Yu.
- Current README era: The GitHub README says all documentation moved to sylph-docs.github.io.
- Homebrew packaging: The input package facts identify sylph as a Homebrew formula exposing the sylph executable.
Related projects
- Related tools and references named by the official docs include Kraken, MetaPhlAn, mOTUs, GTDB databases, Bioconda, Rust/Cargo, and sylph-tax.
Quellen
- https://github.com/bluenote-1577/sylph
- https://github.com/bluenote-1577/sylph/blob/main/README.md
- https://sylph-docs.github.io/
- source_facts.executables
- source_facts.package-manager
Sicherheitslage
Risikostufe: grün
narrow executable package without higher-risk signals.
Risikoklassifikator
grün Risiko · niedrig Konfidenz · appliance
Warum
- narrow executable package without higher-risk signals
Signale
- metadata:no-higher-risk-signals
Installationsverhalten
- In den Formelmetadaten ist kein Homebrew-Post-install-Hook erfasst.
- Homebrew-Bottle-Metadaten sind für 6 Plattformziele verfügbar.
- Build-Metadaten listen 2 Build-Abhängigkeiten.
Empfohlene Prüfung
Prüfe vor unbeaufsichtigter Agent-Nutzung, ob das Tool Klartext-Credentials liest, Remote-Zustand schreibt, Artefakte veröffentlicht oder Plugins ausführt.
Executables
Installierte Executables
| Befehl | Art | Sichtbarkeit | Hinweis |
|---|---|---|---|
sylph | cli | globales Executable |
Aktualität
Version und Aktualität
Diese Signale trennen das Alter der Seitengenerierung, Aktivität des Paketmanagers und Upstream-Release-Vergleich. Versionsrückstand wird nur gemeldet, wenn eine Evidenz-URL und vergleichbare Versionen vorhanden sind.
Seite generiert2026-07-08
Manager-Version0.9.0
Manager aktualisiert
lokale DatenOK
Upstreamaktuell
neueste erkannte Versionv0.9.0
https://github.com/bluenote-1577/sylph
- InfoNo package-manager update timestamp was available.niedrig Konfidenz
Installationsmetadaten
Paketmetadaten
| Paketschlüssel | brew:sylph |
|---|---|
| Version | 0.9.0 |
| Paketmanager | Homebrew |
| Paketmanager-Seite | https://formulae.brew.sh/formula/sylph |
| Homepage | https://github.com/bluenote-1577/sylph |
| Repository | https://github.com/bluenote-1577/sylph |
| Upstream-Dokumentation | https://github.com/bluenote-1577/sylph/blob/main/README.md |
| Lizenz | MIT |
| Quellarchiv | https://github.com/bluenote-1577/sylph/archive/refs/tags/v0.9.0.tar.gz |
| Build-Abhängigkeiten | cmake, rust |
| Bottle | verfügbar (auf arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux) |
| Homebrew post-install | nicht definiert |
| Dienst | keiner deklariert |
Registry-Fakten
Details aus der Quelldatenbank
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | sylph |
| Version Scheme | 0 |
| Revision | 0 |
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
Quellspur
Aus Repository-Daten generiert
Diese Seite wird von av-web aus dem privaten Paket-SQLite-Artefakt bereitgestellt, das scripts/generate-pkg-sqlite.py erstellt.
Combined YAML source
View the package source record on GitHub.
Verwendete Quellen
- Geiger risk classifier
- Nucleus package database
- av.db category and tag curation
- cross-ecosystem install command graph
- curated package history
- package relationship graph
- package version freshness
- package-page enrichment