macOS
Homebrewverifiziert · 100%
brew install dxpylocal Homebrew formula metadata
brew
dxpy mit Homebrew installieren
Prüfe Installationswege, Executables, Metadaten und Sicherheitshinweise für dxpy in AI-Agent-Workflows.
Installation
Weitere Installationsbefehle
Überblick
Paketzusammenfassung
DNAnexus toolkit utilities and platform API bindings for Python
Projektlinks
Befehle und Aliase
- dx-app-wizard
- dx-build-app
- dx-build-applet
- dx-clone-asset
- dx-docker
- dx-download-all-inputs
- dx-fetch-bundled-depends
- dx-generate-dxapp
- dx-jobutil-add-output
- dx-jobutil-dxlink
- dx-jobutil-get-identity-token
- dx-jobutil-new-job
- dx-jobutil-parse-link
- dx-jobutil-report-error
- dx-log-stream
- dx-mount-all-inputs
- dx-notebook-reconnect
- dx-print-bash-vars
- dx-upload-all-outputs
Verlauf
Projektgeschichte und Nutzung
dxpy is the Python binding layer and command-line toolkit for the DNAnexus platform. The official Read the Docs page describes dxpy as Python bindings for interacting with the DNAnexus Platform API, both inside the DNAnexus execution environment and from external scripts.
Projektgeschichte
The official dx-toolkit git history begins with imported history in 2011 and early repository reorganization in March 2012. Official tags show v0.0.1 on 2012-08-09 and a long continuous release stream through v0.410.0 in June 2026.
Adoptionsgeschichte
Unlike general-purpose Unix tools, dxpy adoption follows the DNAnexus platform itself: researchers and bioinformatics engineers use it to script platform objects, projects, files, apps, workflows, jobs, and API calls. The batch input exposes this as a Homebrew package with many dx-* executables rather than just a Python library.
Wie es verwendet wird
The official docs organize dxpy around Pythonic bindings, low-level API wrappers, object handlers, projects, records, files, genomic tables, applets, apps, workflows, jobs, search, app building, utilities, and exceptions. In practice the packaged toolkit is used for DNAnexus login/configuration, data movement, applet/app development, job utilities, logging, Docker/Nextflow helper workflows, and scripted platform automation.
Warum Paket-Nerds sich dafür interessieren
dxpy is significant as a packaged scientific-platform SDK: it turns a hosted genomics and biomedical analysis platform into reproducible shell and Python workflows. For package managers, it is a reminder that many science packages are not just libraries but operational CLIs with credentials, cloud objects, and platform-specific execution assumptions.
Zeitleiste
- 2011: Official git history begins with imported repository history.
- 2012: v0.0.1 tagged and DNAnexus Python docs carry 2012-2013 copyright.
- 2020: v0.300.0 tagged.
- 2023: v0.350.0 tagged.
- 2025: v0.400.0 tagged.
- 2026: v0.410.0 appears in the official changelog and tag list.
Related projects
- dxpy is part of DNAnexus dx-toolkit alongside the dx command family, DNAnexus API documentation, platform documentation, app builders, job utilities, Docker helpers, and Nextflow-related tooling referenced in recent changelog entries.
Quellen
Sicherheitslage
Noch keine Protected-Tool-Abdeckung gefunden
Für dxpy wurde kein passendes lokales Secret-Handling-Manifest gefunden. Nucleus-Paketmetadaten bleiben hier veröffentlicht, damit künftige Abdeckung eine stabile Paket-URL hat.
Installationsverhalten
- In den Formelmetadaten ist kein Homebrew-Post-install-Hook erfasst.
- Homebrew-Bottle-Metadaten sind für 6 Plattformziele verfügbar.
- Installiert mit 16 Laufzeitabhängigkeiten.
Empfohlene Prüfung
Prüfe vor unbeaufsichtigter Agent-Nutzung, ob das Tool Klartext-Credentials liest, Remote-Zustand schreibt, Artefakte veröffentlicht oder Plugins ausführt.
local files
Configuration and credential file locations
These source-backed paths show where this package keeps local settings or durable credentials. Automic Vault can use them as review targets for secret scanning, migration, and command approval.
Configuration files
Config paths the tool may read or write during local use.
- Unix
~/.dnanexus_config/environment.json
Credential files
Credential-bearing paths to review before unattended agent runs.
- Unix
~/.dnanexus_config/environment.json
Executables
Installierte Executables
| Befehl | Art | Sichtbarkeit | Hinweis |
|---|---|---|---|
dx-app-wizard | cli | globales Executable | |
dx-build-app | cli | globales Executable | |
dx-build-applet | cli | globales Executable | |
dx-clone-asset | cli | globales Executable | |
dx-docker | cli | globales Executable | |
dx-download-all-inputs | cli | globales Executable | |
dx-fetch-bundled-depends | cli | globales Executable | |
dx-generate-dxapp | cli | globales Executable | |
dx-jobutil-add-output | cli | globales Executable | |
dx-jobutil-dxlink | cli | globales Executable | |
dx-jobutil-get-identity-token | cli | globales Executable | |
dx-jobutil-new-job | cli | globales Executable | |
dx-jobutil-parse-link | cli | globales Executable | |
dx-jobutil-report-error | cli | globales Executable | |
dx-log-stream | cli | globales Executable | |
dx-mount-all-inputs | cli | globales Executable | |
dx-notebook-reconnect | cli | globales Executable | |
dx-print-bash-vars | cli | globales Executable | |
dx-upload-all-outputs | cli | globales Executable |
Aktualität
Version und Aktualität
Diese Signale trennen das Alter der Seitengenerierung, Aktivität des Paketmanagers und Upstream-Release-Vergleich. Versionsrückstand wird nur gemeldet, wenn eine Evidenz-URL und vergleichbare Versionen vorhanden sind.
Seite generiert2026-07-08
Manager-Version0.409.0
Manager aktualisiert2026-06-24
lokale DatenOK
Upstreamnot checked
neueste erkannte Versionnicht erkannt
https://github.com/dnanexus/dx-toolkit
- InfoNo cached GitHub release or tag data was available.https://github.com/dnanexus/dx-toolkitnone Konfidenz
Installationsmetadaten
Paketmetadaten
| Paketschlüssel | brew:dxpy |
|---|---|
| Version | 0.409.0 |
| Paketmanager | Homebrew |
| Paketmanager-Seite | https://formulae.brew.sh/formula/dxpy |
| Homepage | https://github.com/dnanexus/dx-toolkit |
| Repository | https://github.com/dnanexus/dx-toolkit |
| Upstream-Dokumentation | http://autodoc.dnanexus.com/ |
| Lizenz | Apache-2.0 |
| Quellarchiv | https://files.pythonhosted.org/packages/d8/cb/c53cbfef4871d8bb5981935c09ef4f669937bfefd467fb5587689e10f38c/dxpy-0.409.0.tar.gz |
| Zuletzt aktualisiert | 2026-06-24T12:47:49Z |
| Pulse | updated |
| Abhängigkeiten | aws-c-auth, aws-c-cal, aws-c-common, aws-c-compression, aws-c-event-stream, aws-c-http, aws-c-io, aws-c-mqtt, aws-c-s3, aws-c-sdkutils, aws-checksums, certifi, cryptography, openssl@3, python@3.14, s2n |
| Bottle | verfügbar (auf arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux) |
| Homebrew post-install | nicht definiert |
| Dienst | keiner deklariert |
Registry-Fakten
Details aus der Quelldatenbank
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | dxpy |
| Version Scheme | 0 |
| Revision | 0 |
| Conflicts With |
|
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
Quellspur
Aus Repository-Daten generiert
Diese Seite wird von av-web aus dem privaten Paket-SQLite-Artefakt bereitgestellt, das scripts/generate-pkg-sqlite.py erstellt.
Combined YAML source
View the package source record on GitHub.
Verwendete Quellen
- Geiger risk classifier
- Nucleus package database
- av.db category and tag curation
- cross-ecosystem install command graph
- curated configuration and credential file locations
- curated package history
- package relationship graph
- package version freshness
- package-page enrichment