macOS
Homebrew已验证 · 100%
brew install kalignlocal Homebrew formula metadata
安装
其他安装命令
Linux
Debian apt已验证 · 92%
sudo apt install kalignDebian stable package indexes · kalign · 来源: deb.debian.org
Nix已验证 · 92%
nix profile install nixpkgs#kalignnixpkgs package indexes · pkgs/by-name/ka/kalign/package.nix · 来源: api.github.com
概览
软件包摘要
Fast multiple sequence alignment program for biological sequences
历史
项目历史与用法
Kalign is a fast multiple-sequence-alignment program for protein, DNA, and RNA sequences, distributed as a command-line bioinformatics tool.
项目历史
Timo Lassmann and Erik Sonnhammer published the original Kalign method in BMC Bioinformatics on 2005-12-12. The paper described a Wu-Manber-based progressive alignment method intended to improve both speed and accuracy for large comparative-genomics workloads.
采用历史
Kalign remained in the bioinformatics toolchain because multiple sequence alignment is a routine upstream step for homology, conserved-motif, phylogeny, and structure-oriented analyses. Kalign 3, published in Bioinformatics in 2019, was presented as a complete rewrite to handle larger protein and nucleotide sequence sets, using SIMD-accelerated distance estimation and fast guide-tree construction.
使用方式
Users run kalign on FASTA-like biological sequence inputs to produce multiple alignments. The modern README describes progressive alignment with multi-threading support, source builds with CMake, and alternatives such as Zig builds and Python packaging.
为什么软件包爱好者会关心
Kalign is a classic science CLI package: a published algorithm wrapped in a small executable, useful in scripts and pipelines, with package-manager availability making a cited method reproducible without hand-building a lab-specific binary.
时间线
- 2005-12-12: Original Kalign paper published in BMC Bioinformatics.
- 2019-10-26: Kalign 3 paper published in Bioinformatics.
- 2019-10-28: GitHub release 3.1 published.
- 2020-11-06: v3.3 release added multi-threading.
- 2026-02-27: Kalign 3.5.1 published.
Related projects
- Related multiple-sequence-alignment tools include ClustalW, MAFFT, MUSCLE, T-Coffee, and other progressive or consistency-based MSA programs.
来源
安全态势
风险级别：绿色
narrow executable package without higher-risk signals.
风险分类器
绿色 风险 · 低 置信度 · appliance
原因
- narrow executable package without higher-risk signals
信号
- metadata:no-higher-risk-signals
安装行为
- formula 元数据中未记录 Homebrew post-install 钩子。
- Homebrew bottle 元数据适用于 6 个平台目标。
- 安装时包含 1 个运行时依赖。
- 构建元数据列出 1 个构建依赖。
建议审查
在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。
可执行文件
已安装的可执行文件
| 命令 | 类型 | 暴露范围 | 备注 |
|---|---|---|---|
kalign | cli | 全局可执行文件 |
新鲜度
版本和新鲜度
这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。
页面生成时间2026-07-08
管理器版本3.5.1
管理器更新时间
本地数据OK
上游当前
检测到的最新版本v3.5.1
https://github.com/TimoLassmann/kalign
- 信息No package-manager update timestamp was available.低 置信度
安装元数据
软件包元数据
| 软件包键 | brew:kalign |
|---|---|
| 版本 | 3.5.1 |
| 软件包管理器 | Homebrew |
| 软件包管理器页面 | https://formulae.brew.sh/formula/kalign |
| 主页 | https://github.com/TimoLassmann/kalign |
| 仓库 | https://github.com/TimoLassmann/kalign |
| 上游文档 | https://github.com/TimoLassmann/kalign#readme |
| 许可证 | Apache-2.0 |
| 源码归档 | https://github.com/TimoLassmann/kalign/archive/refs/tags/v3.5.1.tar.gz |
| 依赖 | libomp |
| 构建依赖 | cmake |
| Bottle | 可用 (于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux) |
| Homebrew post-install | 未定义 |
| 服务 | 未声明 |
注册表事实
源数据库详情
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | kalign |
| Version Scheme | 0 |
| Revision | 0 |
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
源数据库匹配
其他软件包管理器记录
匹配项来自外部软件包管理器索引，并与本地 Automic Vault 软件包链接分开显示。
Debian apt95%
kalign 1:3.4.0-1+b3
Global and progressive multiple sequence alignment
sudo apt install kalign- Section: science
- Architecture: amd64
- Source Package: kalign
- 2 依赖
- normalized package name match
- 匹配方式：Kalign
Nix95%
kalign
nix profile install nixpkgs#kalign- normalized package name match
- 匹配方式：Kalign
Ubuntu apt95%
kalign 1:3.3.5-1
Global and progressive multiple sequence alignment
sudo apt install kalign- Section: universe/science
- Architecture: amd64
- 2 依赖
- normalized package name match
- 匹配方式：Kalign
来源线索
由仓库数据生成
此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。
Combined YAML source
View the package source record on GitHub.
使用的来源
- Geiger risk classifier
- Nucleus package database
- av.db category and tag curation
- cross-ecosystem install command graph
- curated package history
- external package-manager database matches
- package relationship graph
- package version freshness
- package-page enrichment