macOS
Homebrew已验证 · 100%
brew install mummerlocal Homebrew formula metadata
安装
其他安装命令
Linux
Debian apt已验证 · 92%
sudo apt install mummerDebian stable package indexes · mummer · 来源: deb.debian.org
概览
软件包摘要
Genome alignment tool
历史
项目历史与用法
MUMmer is a bioinformatics sequence-alignment package built around maximal unique matches and suffix-based data structures. The first MUMmer paper, "Alignment of whole genomes," by Arthur L. Delcher, Simon Kasif, Robert D. Fleischmann, Jeremy Peterson, Owen White, and Steven L. Salzberg, described a system for rapidly aligning genome-length DNA sequences with suffix trees, demonstrated on bacterial strains, Mycoplasma genomes, and syntenic human/mouse sequences. The name refers to MUMs, or maximal unique matches, used as anchors for large-scale alignments.
项目历史
The package's major releases track the growth of genome data. MUMmer 2.1 added NUCmer and PROmer and was described by Delcher, Adam Phillippy, Jane Carlton, and Salzberg as faster and more memory-efficient for large-scale genome alignment and comparison. MUMmer 3.0, described by Stefan Kurtz, Phillippy, Delcher, and collaborators in Genome Biology, made the software open source and better suited to comparing large genomes. MUMmer4, developed by Guillaume Marcais and Aleksey Zimin with the broader MUMmer team, reworked the core from MUMmer3's 32-bit suffix tree constraints toward a 48-bit suffix-array approach and added parallel query processing; the PLOS Computational Biology paper describes MUMmer and nucmer as among the widely used alignment packages in genomics.
使用方式
In practice, researchers use the suite's commands for whole-genome alignment, draft assembly comparison, contig-to-contig alignment, variant and SNP inspection, dot plots, and translated protein-level comparisons. The package-manager niche is scientific command-line software: Homebrew and Debian/Ubuntu packages expose tools such as `mummer`, `nucmer`, `promer`, `dnadiff`, `delta-filter`, `show-coords`, `show-snps`, and `mummerplot`, making a research-grade genome comparison toolkit installable like ordinary Unix utilities.
来源
安全态势
风险级别：绿色
narrow executable package without higher-risk signals.
风险分类器
绿色 风险 · 低 置信度 · appliance
原因
- narrow executable package without higher-risk signals
信号
- metadata:no-higher-risk-signals
安装行为
- formula 元数据中未记录 Homebrew post-install 钩子。
- Homebrew bottle 元数据适用于 8 个平台目标。
- 安装时包含 1 个运行时依赖。
建议审查
在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。
可执行文件
已安装的可执行文件
| 命令 | 类型 | 暴露范围 | 备注 |
|---|---|---|---|
combineMUMs | cli | 全局可执行文件 | |
delta-filter | cli | 全局可执行文件 | |
dnadiff | cli | 全局可执行文件 | |
exact-tandems | cli | 全局可执行文件 | |
mummer | cli | 全局可执行文件 | |
mummerplot | cli | 全局可执行文件 | |
nucmer | cli | 全局可执行文件 | |
promer | cli | 全局可执行文件 | |
repeat-match | cli | 全局可执行文件 | |
show-aligns | cli | 全局可执行文件 | |
show-coords | cli | 全局可执行文件 | |
show-diff | cli | 全局可执行文件 | |
show-snps | cli | 全局可执行文件 | |
show-tiling | cli | 全局可执行文件 |
新鲜度
版本和新鲜度
这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。
页面生成时间2026-07-08
管理器版本4.0.1
管理器更新时间
本地数据OK
上游not checked
检测到的最新版本未检测到
https://github.com/mummer4/mummer
- 信息No package-manager update timestamp was available.低 置信度
- 信息No cached GitHub release or tag data was available.https://github.com/mummer4/mummernone 置信度
安装元数据
软件包元数据
| 软件包键 | brew:mummer |
|---|---|
| 版本 | 4.0.1 |
| 软件包管理器 | Homebrew |
| 软件包管理器页面 | https://formulae.brew.sh/formula/mummer |
| 主页 | https://github.com/mummer4/mummer |
| 仓库 | https://github.com/mummer4/mummer |
| 上游文档 | https://github.com/mummer4/mummer#readme |
| 许可证 | Artistic-2.0 |
| 源码归档 | https://github.com/mummer4/mummer/releases/download/v4.0.1/mummer-4.0.1.tar.gz |
| 依赖 | gcc |
| Bottle | 可用 (于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, arm64_ventura, sonoma, ventura, x86_64_linux) |
| Homebrew post-install | 未定义 |
| 服务 | 未声明 |
注册表事实
源数据库详情
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | mummer |
| Version Scheme | 0 |
| Revision | 0 |
| Conflicts With |
|
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
源数据库匹配
其他软件包管理器记录
匹配项来自外部软件包管理器索引，并与本地 Automic Vault 软件包链接分开显示。
Debian apt95%
mummer 3.23+dfsg-8
Efficient sequence alignment of full genomes
https://mummer.sourceforge.net/
sudo apt install mummer- Section: science
- Architecture: amd64
- 5 依赖
- normalized package name match
- 匹配方式：Mummer
Debian apt95%
mummer-doc 3.23+dfsg-8
Documentation for MUMmer
https://mummer.sourceforge.net/
sudo apt install mummer-doc- Section: doc
- Architecture: all
- Source Package: mummer
- normalized package name match
- 匹配方式：Mummer
Ubuntu apt95%
mummer 3.23+dfsg-8
Efficient sequence alignment of full genomes
https://mummer.sourceforge.net/
sudo apt install mummer- Section: universe/science
- Architecture: amd64
- 5 依赖
- normalized package name match
- 匹配方式：Mummer
Ubuntu apt95%
mummer-doc 3.23+dfsg-8
Documentation for MUMmer
https://mummer.sourceforge.net/
sudo apt install mummer-doc- Section: universe/doc
- Architecture: all
- Source Package: mummer
- normalized package name match
- 匹配方式：Mummer
来源线索
由仓库数据生成
此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。
Combined YAML source
View the package source record on GitHub.
使用的来源
- Geiger risk classifier
- Nucleus package database
- av.db category and tag curation
- cross-ecosystem install command graph
- curated package history
- external package-manager database matches
- package relationship graph
- package version freshness
- package-page enrichment