macOS
Homebrew已验证 · 100%
brew install genometoolslocal Homebrew formula metadata
安装
其他安装命令
Linux
Debian apt已验证 · 92%
sudo apt install genometoolsDebian stable package indexes · genometools · 来源: deb.debian.org
概览
软件包摘要
Versatile open source genome analysis software
历史
项目历史与用法
GenomeTools is an open source genome informatics system centered on a single gt command and the libgenometools C library. It collects command-line tools, APIs, and published bioinformatics components for structured genome annotations, sequence analysis, annotation visualization, and related workflows.
项目历史
The project archive shows public source tarballs beginning with the 0.6.x series in 2007 and a 1.0.0 release later that year. The official overview describes the system as a collection of bioinformatics tools combined into one binary and based on libgenometools, with development credited to Gordon Gremme, Sascha Steinbiss, Stefan Kurtz, and contributors at the University of Hamburg's Genome Informatics group.
The 2013 GenomeTools publication framed the project as a comprehensive software library for efficient processing of structured genome annotations. Around that core, the official site lists separately published components such as LTRharvest, Tallymer, AnnotationSketch, LTRdigest, GtEncseq, Readjoiner, and related tools built on the same library.
采用历史
GenomeTools gained significance through bioinformatics publications and through its packaging as a reusable command-line suite rather than a single-purpose script. Its official site points to manuals, manpage-style tool documentation, a C API, Lua-based gtscript documentation, and a GFF3 validator, which made it useful both for end users and developers building genome-annotation workflows.
使用方式
Practitioners use GenomeTools for tasks such as validating and processing GFF3, drawing genome annotations, finding LTR retrotransposons, counting or indexing sequence features, assembling reads, and scripting analyses around the gt command. Developers can use libgenometools and the documented C API when command-line composition is not enough.
为什么软件包爱好者会关心
GenomeTools is a good example of scientific software that package managers preserve because reproducible research workflows depend on exact command-line behavior, compiled C libraries, and long-lived manual pages.
时间线
- 2007: the project archive listed the 0.6.x series and 1.0.0 tarballs.
- 2008: the official site listed published GenomeTools components including LTRharvest and Tallymer.
- 2013: the GenomeTools software-library paper appeared in IEEE/ACM Transactions on Computational Biology and Bioinformatics.
- 2021: the project archive listed the 1.6.2 tarball.
Related projects
- Related GenomeTools components and adjacent projects include libgenometools, gt, AnnotationSketch, LTRharvest, LTRdigest, Tallymer, GtEncseq, Readjoiner, GenomeThreader, and GFF3 validation tooling.
来源
安全态势
风险级别：绿色
narrow executable package without higher-risk signals.
风险分类器
绿色 风险 · 低 置信度 · appliance
原因
- narrow executable package without higher-risk signals
信号
- metadata:no-higher-risk-signals
安装行为
- formula 元数据中未记录 Homebrew post-install 钩子。
- Homebrew bottle 元数据适用于 6 个平台目标。
- 安装时包含 6 个运行时依赖。
- 构建元数据列出 2 个构建依赖。
建议审查
在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。
可执行文件
已安装的可执行文件
| 命令 | 类型 | 暴露范围 | 备注 |
|---|---|---|---|
genometools-config | cli | 全局可执行文件 |
新鲜度
版本和新鲜度
这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。
页面生成时间2026-07-10
管理器版本1.6.6
管理器更新时间
本地数据OK
上游当前
检测到的最新版本v1.6.6
https://github.com/genometools/genometools
- 信息No package-manager update timestamp was available.低 置信度
安装元数据
软件包元数据
| 软件包键 | brew:genometools |
|---|---|
| 版本 | 1.6.6 |
| 软件包管理器 | Homebrew |
| 软件包管理器页面 | https://formulae.brew.sh/formula/genometools |
| 主页 | https://genometools.org/ |
| 仓库 | https://github.com/genometools/genometools |
| 上游文档 | https://genometools.org/documentation.html |
| 许可证 | ISC |
| 源码归档 | https://github.com/genometools/genometools/archive/refs/tags/v1.6.6.tar.gz |
| 依赖 | cairo, gettext, glib, harfbuzz, pango, tre |
| 构建依赖 | pkgconf, python@3.14 |
| macOS 提供的库 | bzip2, expat, sqlite |
| Bottle | 可用 (于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux) |
| Homebrew post-install | 未定义 |
| 服务 | 未声明 |
注册表事实
源数据库详情
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | genometools |
| Version Scheme | 0 |
| Revision | 0 |
| Head Version | HEAD |
| Conflicts With |
|
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
源数据库匹配
其他软件包管理器记录
匹配项来自外部软件包管理器索引，并与本地 Automic Vault 软件包链接分开显示。
Debian apt95%
genometools 1.6.5+ds-2.2
versatile genome analysis toolkit
sudo apt install genometools- Section: science
- Architecture: amd64
- 15 依赖
- normalized package name match
- 匹配方式：Genometools
Debian apt95%
genometools-common 1.6.5+ds-2.2
shared data files for GenomeTools
sudo apt install genometools-common- Section: science
- Architecture: all
- Source Package: genometools
- 9 依赖
- normalized package name match
- 匹配方式：Genometools
Debian apt95%
genometools-doc 1.6.5+ds-2.2
documentation for GenomeTools
sudo apt install genometools-doc- Section: doc
- Architecture: all
- Source Package: genometools
- normalized package name match
- 匹配方式：Genometools
Debian apt95%
libgenometools0-dev 1.6.5+ds-2.2
development files for GenomeTools
sudo apt install libgenometools0-dev- Section: libdevel
- Architecture: amd64
- Source Package: genometools
- 1 依赖
- normalized package name match
- 匹配方式：Genometools
Debian apt95%
libgenometools0t64 1.6.5+ds-2.2
versatile genome analysis library
sudo apt install libgenometools0t64- Section: libs
- Architecture: amd64
- Source Package: genometools
- 13 依赖
- 1 提供
- normalized package name match
- 匹配方式：Genometools
Debian apt95%
python3-genometools 1.6.5+ds-2.2
Python3 bindings for genometools
sudo apt install python3-genometools- Section: python
- Architecture: all
- Source Package: genometools
- 2 依赖
- normalized package name match
- 匹配方式：Genometools
Ubuntu apt95%
genometools 1.6.5+ds-2.1ubuntu2
versatile genome analysis toolkit
sudo apt install genometools- Section: universe/science
- Architecture: amd64
- 15 依赖
- normalized package name match
- 匹配方式：Genometools
Ubuntu apt95%
genometools-common 1.6.5+ds-2.1ubuntu2
shared data files for GenomeTools
sudo apt install genometools-common- Section: universe/science
- Architecture: all
- Source Package: genometools
- 9 依赖
- normalized package name match
- 匹配方式：Genometools
Ubuntu apt95%
genometools-doc 1.6.5+ds-2.1ubuntu2
documentation for GenomeTools
sudo apt install genometools-doc- Section: universe/doc
- Architecture: all
- Source Package: genometools
- normalized package name match
- 匹配方式：Genometools
Ubuntu apt95%
libgenometools0-dev 1.6.5+ds-2.1ubuntu2
development files for GenomeTools
sudo apt install libgenometools0-dev- Section: universe/libdevel
- Architecture: amd64
- Source Package: genometools
- 1 依赖
- normalized package name match
- 匹配方式：Genometools
Ubuntu apt95%
libgenometools0t64 1.6.5+ds-2.1ubuntu2
versatile genome analysis library
sudo apt install libgenometools0t64- Section: universe/libs
- Architecture: amd64
- Source Package: genometools
- 13 依赖
- 1 提供
- normalized package name match
- 匹配方式：Genometools
Ubuntu apt95%
python3-genometools 1.6.5+ds-2.1ubuntu2
Python3 bindings for genometools
sudo apt install python3-genometools- Section: universe/python
- Architecture: all
- Source Package: genometools
- 2 依赖
- normalized package name match
- 匹配方式：Genometools
来源线索
由仓库数据生成
此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。
Combined YAML source
View the package source record on GitHub.
使用的来源
- Geiger risk classifier
- Nucleus package database
- av.db category and tag curation
- cross-ecosystem install command graph
- curated package history
- external package-manager database matches
- package relationship graph
- package version freshness
- package-page enrichment