macOS
Homebrew已验证 · 100%
brew install adapterremovallocal Homebrew formula metadata
安装
其他安装命令
Linux
Debian apt已验证 · 92%
sudo apt install adapterremovalDebian stable package indexes · adapterremoval · 来源: deb.debian.org
概览
软件包摘要
Rapid adapter trimming, identification, and read merging
历史
项目历史与用法
AdapterRemoval is a bioinformatics command-line tool for trimming adapter sequences, trimming low-quality bases, merging overlapping paired-end reads, demultiplexing barcoded reads, and producing sequencing QC reports.
项目历史
The README cites the original AdapterRemoval publication by Lindgreen in 2012 and the AdapterRemoval v2 paper by Schubert, Lindgreen, and Orlando in 2016. Version 3 is described as a major revision of version 2 focused on simpler defaults, more features, and higher throughput.
The GitHub repository was created in 2014 and now publishes the `adapterremoval3` command with documentation hosted on Read the Docs.
采用历史
AdapterRemoval became a common sequencing utility because adapter trimming and read merging are routine preprocessing steps for high-throughput sequencing FASTQ data. Its README notes precompiled binaries for Linux, macOS, and Windows, and the supplied input lists Homebrew, Debian, and Ubuntu packages.
使用方式
Users run `adapterremoval3` with input FASTQ files and an output prefix; default behavior can automatically detect adapters, trim low-quality bases, filter reads, write compressed FASTQ, and generate HTML and JSON reports.
为什么软件包爱好者会关心
For package maintainers, AdapterRemoval is a good example of a scientific CLI where reproducibility, CPU-specific acceleration, compression libraries, and manpage/docs installation all matter. Version 3 adds SIMD acceleration and broader platform packaging concerns.
时间线
- 2012: Original AdapterRemoval publication appeared in BMC Research Notes.
- 2014: GitHub repository `MikkelSchubert/adapterremoval` was created.
- 2016: AdapterRemoval v2 paper described rapid adapter trimming, identification, and read merging.
- 2022: First AdapterRemoval v3 alpha release was published.
- 2026: AdapterRemoval v3.0.0 was published.
Related projects
- Related tools and domains include FASTQ preprocessing pipelines, adapter trimming utilities, Illumina sequencing workflows, SAM/BAM output handling, and QC report generators.
来源
安全态势
尚未找到受保护工具覆盖
没有找到 adapterremoval 的匹配本地密钥处理 manifest。Nucleus 软件包元数据仍在此发布，以便未来覆盖拥有稳定的软件包 URL。
安装行为
- formula 元数据中未记录 Homebrew post-install 钩子。
- Homebrew bottle 元数据适用于 6 个平台目标。
- 安装时包含 2 个运行时依赖。
- 构建元数据列出 4 个构建依赖。
建议审查
在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。
可执行文件
已安装的可执行文件
| 命令 | 类型 | 暴露范围 | 备注 |
|---|---|---|---|
adapterremoval3 | cli | 全局可执行文件 |
新鲜度
版本和新鲜度
这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。
页面生成时间2026-07-10
管理器版本3.0.1
管理器更新时间2026-07-02
本地数据OK
上游当前
检测到的最新版本v3.0.1
https://github.com/MikkelSchubert/adapterremoval
- OK没有生成新鲜度警告。
安装元数据
软件包元数据
| 软件包键 | brew:adapterremoval |
|---|---|
| 版本 | 3.0.1 |
| 软件包管理器 | Homebrew |
| 软件包管理器页面 | https://formulae.brew.sh/formula/adapterremoval |
| 主页 | https://github.com/MikkelSchubert/adapterremoval |
| 仓库 | https://github.com/MikkelSchubert/adapterremoval |
| 上游文档 | https://adapterremoval.readthedocs.io/ |
| 许可证 | GPL-3.0-or-later |
| 源码归档 | https://github.com/MikkelSchubert/adapterremoval/archive/refs/tags/v3.0.1.tar.gz |
| 最后更新 | 2026-07-02T12:16:02Z |
| Pulse | updated |
| 依赖 | isa-l, libdeflate |
| 构建依赖 | meson, ninja, pkgconf, sphinx-doc |
| Bottle | 可用 (于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux) |
| Homebrew post-install | 未定义 |
| 服务 | 未声明 |
注册表事实
源数据库详情
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | adapterremoval |
| Version Scheme | 0 |
| Revision | 0 |
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
源数据库匹配
其他软件包管理器记录
匹配项来自外部软件包管理器索引，并与本地 Automic Vault 软件包链接分开显示。
Debian apt95%
adapterremoval 2.3.4-1
rapid adapter trimming, identification, and read merging of gene sequences
https://github.com/MikkelSchubert/adapterremoval
sudo apt install adapterremoval- Section: science
- Architecture: amd64
- 5 依赖
- normalized package name match
- 匹配方式：Adapterremoval
Debian apt95%
adapterremoval-examples 2.3.4-1
rapid adapter trimming, identification, and read merging (example data)
https://github.com/MikkelSchubert/adapterremoval
sudo apt install adapterremoval-examples- Section: science
- Architecture: all
- Source Package: adapterremoval
- normalized package name match
- 匹配方式：Adapterremoval
Ubuntu apt95%
adapterremoval 2.3.3-2
rapid adapter trimming, identification, and read merging of gene sequences
https://github.com/MikkelSchubert/adapterremoval
sudo apt install adapterremoval- Section: universe/science
- Architecture: amd64
- 5 依赖
- normalized package name match
- 匹配方式：Adapterremoval
Ubuntu apt95%
adapterremoval-examples 2.3.3-2
rapid adapter trimming, identification, and read merging (example data)
https://github.com/MikkelSchubert/adapterremoval
sudo apt install adapterremoval-examples- Section: universe/science
- Architecture: all
- Source Package: adapterremoval
- normalized package name match
- 匹配方式：Adapterremoval
来源线索
由仓库数据生成
此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。
Combined YAML source
View the package source record on GitHub.
使用的来源
- Geiger risk classifier
- Nucleus package database
- av.db category and tag curation
- cross-ecosystem install command graph
- curated package history
- external package-manager database matches
- package relationship graph
- package version freshness
- package-page enrichment