macOS
Homebrew已验证 · 100%
brew install minimap2local Homebrew formula metadata
安装
其他安装命令
Linux
Debian apt已验证 · 92%
sudo apt install libminimap2-devDebian stable package indexes · libminimap2-dev · 来源: deb.debian.org
Nix已验证 · 92%
nix profile install nixpkgs#minimap2nixpkgs package indexes · pkgs/by-name/mi/minimap2/package.nix · 来源: api.github.com
概览
软件包摘要
Versatile pairwise aligner for genomic and spliced nucleotide sequences
历史
项目历史与用法
minimap2 is Heng Li's successor to the original minimap, designed for the alignment problems created by long-read sequencing and large genomic assemblies. The 2017 preprint and 2018 Bioinformatics paper present it as a general-purpose pairwise aligner for DNA and long mRNA sequences, motivated by ultra-long reads, full-length transcript reads, and contigs that older aligners could not process efficiently at scale.
项目历史
Its major technical contribution is being broad without being slow. The paper describes minimap2 as usable for short reads, assembly contigs, noisy long genomic reads, RNA-seq reads, read overlap detection, and full-genome alignment. The implementation combines fast chaining with base-level alignment improvements, including Suzuki-Kasahara dynamic programming, to make long-read and splice-aware alignment practical. The project README highlights the same practical presets: PacBio and Oxford Nanopore genomic reads, Iso-Seq and Nanopore RNA/cDNA alignment, Illumina reads, assembly-to-assembly comparison, and related-species genome alignment.
使用方式
minimap2 became a core bioinformatics command-line tool because long-read sequencing workflows needed one aligner that could cover many data types. It is invoked directly in pipelines and through higher-level platforms, producing SAM or PAF output for downstream tools such as samtools, variant callers, assemblers, and transcript analysis software. In package managers it sits in the genomics CLI niche beside aligners such as BWA-MEM, Bowtie2, BLASR, NGMLR, and GMAP, with its reputation tied to speed, accuracy, and long-read versatility.
来源
安全态势
尚未找到受保护工具覆盖
没有找到 minimap2 的匹配本地密钥处理 manifest。Nucleus 软件包元数据仍在此发布，以便未来覆盖拥有稳定的软件包 URL。
安装行为
- formula 元数据中未记录 Homebrew post-install 钩子。
- Homebrew bottle 元数据适用于 6 个平台目标。
建议审查
在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。
可执行文件
已安装的可执行文件
| 命令 | 类型 | 暴露范围 | 备注 |
|---|---|---|---|
minimap2 | cli | 全局可执行文件 | |
sdust | cli | 全局可执行文件 |
新鲜度
版本和新鲜度
这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。
页面生成时间2026-07-08
管理器版本2.31
管理器更新时间2026-05-20
本地数据OK
上游当前
检测到的最新版本v2.31
https://github.com/lh3/minimap2
- OK没有生成新鲜度警告。
安装元数据
软件包元数据
| 软件包键 | brew:minimap2 |
|---|---|
| 版本 | 2.31 |
| 软件包管理器 | Homebrew |
| 软件包管理器页面 | https://formulae.brew.sh/formula/minimap2 |
| 主页 | https://lh3.github.io/minimap2 |
| 仓库 | https://github.com/lh3/minimap2 |
| 上游文档 | https://lh3.github.io/minimap2/minimap2.html |
| 许可证 | MIT |
| 源码归档 | https://github.com/lh3/minimap2/archive/refs/tags/v2.31.tar.gz |
| 最后更新 | 2026-05-20T00:41:23Z |
| Pulse | updated |
| Bottle | 可用 (于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux) |
| Homebrew post-install | 未定义 |
| 服务 | 未声明 |
注册表事实
源数据库详情
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | minimap2 |
| Version Scheme | 0 |
| Revision | 0 |
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
源数据库匹配
其他软件包管理器记录
匹配项来自外部软件包管理器索引，并与本地 Automic Vault 软件包链接分开显示。
Debian apt95%
libminimap2-dev 2.27+dfsg-1+b3
development headers for libminimap
https://github.com/lh3/minimap2
sudo apt install libminimap2-dev- Section: libdevel
- Architecture: amd64
- Source Package: minimap2
- 1 依赖
- normalized package name match
- 匹配方式：Minimap2
Debian apt95%
minimap2 2.27+dfsg-1+b3
versatile pairwise aligner for genomic and spliced nucleotide sequences
https://github.com/lh3/minimap2
sudo apt install minimap2- Section: science
- Architecture: amd64
- Source Package: minimap2
- 2 依赖
- normalized package name match
- 匹配方式：Minimap2
Debian apt95%
python3-mappy 2.27+dfsg-1+b3
Python3 interface minimap2
https://github.com/lh3/minimap2
sudo apt install python3-mappy- Section: python
- Architecture: amd64
- Source Package: minimap2
- 3 依赖
- normalized package name match
- 匹配方式：Minimap2
Nix95%
minimap2
nix profile install nixpkgs#minimap2- normalized package name match
- 匹配方式：Minimap2
Ubuntu apt95%
libminimap2-dev 2.26+dfsg-1build1
development headers for libminimap
https://github.com/lh3/minimap2
sudo apt install libminimap2-dev- Section: universe/libdevel
- Architecture: amd64
- Source Package: minimap2
- 1 依赖
- normalized package name match
- 匹配方式：Minimap2
Ubuntu apt95%
minimap2 2.26+dfsg-1build1
versatile pairwise aligner for genomic and spliced nucleotide sequences
https://github.com/lh3/minimap2
sudo apt install minimap2- Section: universe/science
- Architecture: amd64
- 2 依赖
- normalized package name match
- 匹配方式：Minimap2
Ubuntu apt95%
python3-mappy 2.26+dfsg-1build1
Python3 interface minimap2
https://github.com/lh3/minimap2
sudo apt install python3-mappy- Section: universe/python
- Architecture: amd64
- Source Package: minimap2
- 3 依赖
- normalized package name match
- 匹配方式：Minimap2
来源线索
由仓库数据生成
此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。
Combined YAML source
View the package source record on GitHub.
使用的来源
- Geiger risk classifier
- Nucleus package database
- av.db category and tag curation
- cross-ecosystem install command graph
- curated package history
- external package-manager database matches
- package relationship graph
- package version freshness
- package-page enrichment