安装

其他安装命令

macOS

Homebrew已验证 · 100%

brew install dxpy

local Homebrew formula metadata

概览

软件包摘要

DNAnexus toolkit utilities and platform API bindings for Python

项目链接

命令和别名

dx-app-wizard
dx-build-app
dx-build-applet
dx-clone-asset
dx-docker
dx-download-all-inputs
dx-fetch-bundled-depends
dx-generate-dxapp
dx-jobutil-add-output
dx-jobutil-dxlink
dx-jobutil-get-identity-token
dx-jobutil-new-job
dx-jobutil-parse-link
dx-jobutil-report-error
dx-log-stream
dx-mount-all-inputs
dx-notebook-reconnect
dx-print-bash-vars
dx-upload-all-outputs

历史

项目历史与用法

dxpy is the Python binding layer and command-line toolkit for the DNAnexus platform. The official Read the Docs page describes dxpy as Python bindings for interacting with the DNAnexus Platform API, both inside the DNAnexus execution environment and from external scripts.

项目历史

The official dx-toolkit git history begins with imported history in 2011 and early repository reorganization in March 2012. Official tags show v0.0.1 on 2012-08-09 and a long continuous release stream through v0.410.0 in June 2026.

采用历史

Unlike general-purpose Unix tools, dxpy adoption follows the DNAnexus platform itself: researchers and bioinformatics engineers use it to script platform objects, projects, files, apps, workflows, jobs, and API calls. The batch input exposes this as a Homebrew package with many dx-* executables rather than just a Python library.

使用方式

The official docs organize dxpy around Pythonic bindings, low-level API wrappers, object handlers, projects, records, files, genomic tables, applets, apps, workflows, jobs, search, app building, utilities, and exceptions. In practice the packaged toolkit is used for DNAnexus login/configuration, data movement, applet/app development, job utilities, logging, Docker/Nextflow helper workflows, and scripted platform automation.

为什么软件包爱好者会关心

dxpy is significant as a packaged scientific-platform SDK: it turns a hosted genomics and biomedical analysis platform into reproducible shell and Python workflows. For package managers, it is a reminder that many science packages are not just libraries but operational CLIs with credentials, cloud objects, and platform-specific execution assumptions.

时间线

2011: Official git history begins with imported repository history.
2012: v0.0.1 tagged and DNAnexus Python docs carry 2012-2013 copyright.
2020: v0.300.0 tagged.
2023: v0.350.0 tagged.
2025: v0.400.0 tagged.
2026: v0.410.0 appears in the official changelog and tag list.

Related projects

dxpy is part of DNAnexus dx-toolkit alongside the dx command family, DNAnexus API documentation, platform documentation, app builders, job utilities, Docker helpers, and Nextflow-related tooling referenced in recent changelog entries.

来源

安全态势

尚未找到受保护工具覆盖

没有找到 dxpy 的匹配本地密钥处理 manifest。Nucleus 软件包元数据仍在此发布，以便未来覆盖拥有稳定的软件包 URL。

安装行为

formula 元数据中未记录 Homebrew post-install 钩子。
Homebrew bottle 元数据适用于 6 个平台目标。
安装时包含 16 个运行时依赖。

建议审查

在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。

local files

Configuration and credential file locations

These source-backed paths show where this package keeps local settings or durable credentials. Automic Vault can use them as review targets for secret scanning, migration, and command approval.

Configuration files

Config paths the tool may read or write during local use.

Unix: ~/.dnanexus_config/environment.json

Credential files

Credential-bearing paths to review before unattended agent runs.

Unix: ~/.dnanexus_config/environment.json

可执行文件

已安装的可执行文件

命令	类型	暴露范围
`dx-app-wizard`	cli	全局可执行文件
`dx-build-app`	cli	全局可执行文件
`dx-build-applet`	cli	全局可执行文件
`dx-clone-asset`	cli	全局可执行文件
`dx-docker`	cli	全局可执行文件
`dx-download-all-inputs`	cli	全局可执行文件
`dx-fetch-bundled-depends`	cli	全局可执行文件
`dx-generate-dxapp`	cli	全局可执行文件
`dx-jobutil-add-output`	cli	全局可执行文件
`dx-jobutil-dxlink`	cli	全局可执行文件
`dx-jobutil-get-identity-token`	cli	全局可执行文件
`dx-jobutil-new-job`	cli	全局可执行文件
`dx-jobutil-parse-link`	cli	全局可执行文件
`dx-jobutil-report-error`	cli	全局可执行文件
`dx-log-stream`	cli	全局可执行文件
`dx-mount-all-inputs`	cli	全局可执行文件
`dx-notebook-reconnect`	cli	全局可执行文件
`dx-print-bash-vars`	cli	全局可执行文件
`dx-upload-all-outputs`	cli	全局可执行文件

新鲜度

版本和新鲜度

这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。

页面生成时间2026-07-08

管理器版本0.409.0

管理器更新时间2026-06-24

本地数据OK

上游not checked

检测到的最新版本未检测到

https://github.com/dnanexus/dx-toolkit

信息No cached GitHub release or tag data was available.https://github.com/dnanexus/dx-toolkitnone 置信度

安装元数据

软件包元数据

软件包键	brew:dxpy
版本	0.409.0
软件包管理器	Homebrew
软件包管理器页面	https://formulae.brew.sh/formula/dxpy
主页	https://github.com/dnanexus/dx-toolkit
仓库	https://github.com/dnanexus/dx-toolkit
上游文档	http://autodoc.dnanexus.com/
许可证	Apache-2.0
源码归档	https://files.pythonhosted.org/packages/d8/cb/c53cbfef4871d8bb5981935c09ef4f669937bfefd467fb5587689e10f38c/dxpy-0.409.0.tar.gz
最后更新	2026-06-24T12:47:49Z
Pulse	updated
依赖	aws-c-auth, aws-c-cal, aws-c-common, aws-c-compression, aws-c-event-stream, aws-c-http, aws-c-io, aws-c-mqtt, aws-c-s3, aws-c-sdkutils, aws-checksums, certifi, cryptography, openssl@3, python@3.14, s2n
Bottle	可用 (于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux)
Homebrew post-install	未定义
服务	未声明

注册表事实

源数据库详情

Source Database	Homebrew formula API
Tap	homebrew/core
Full Name	dxpy
Version Scheme	0
Revision	0
Conflicts With	deno
Bottle Stable Root URL	https://ghcr.io/v2/homebrew/core
Deprecated	no
Disabled	no
Keg Only	no
URL Keys	stable

软件包图谱

链接来自本地软件包关系图、补充数据、依赖边、生态匹配和软件包 hub 归属。

来源线索

由仓库数据生成

此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。

Combined YAML source

View the package source record on GitHub.

combined/dxpy.yml

使用的来源

Geiger risk classifier
Nucleus package database
av.db category and tag curation
cross-ecosystem install command graph
curated configuration and credential file locations
curated package history
package relationship graph
package version freshness
package-page enrichment

使用 Homebrew 安装 dxpy