macOS
Homebrew已验证 · 100%
brew install bedtklocal Homebrew formula metadata
安装
其他安装命令
概览
软件包摘要
Simple toolset for BED files
历史
项目历史与用法
bedtk is Heng Li's compact command-line toolkit for BED files, focused on fast interval overlap operations with a smaller scope than bedtools.
项目历史
The bedtk repository was created in October 2019, with the first visible commit adding interval intersection. Its README describes a simple BED toolset implementing intersection, subtraction, sorting, merging, and breadth-of-coverage calculations.
The project is tied to the 2021 Bioinformatics article 'Bedtk: finding interval overlap with implicit interval tree,' which explains its algorithmic focus. Upstream releases reached v1.0 in April 2025 and v1.2 in August 2025.
采用历史
The supplied package metadata lists Homebrew packaging. Upstream positions bedtk as a narrow, performance-oriented companion rather than a complete bedtools replacement.
使用方式
bedtk is used for operations such as filtering overlapping or non-overlapping BED/VCF records, intersection without pre-sorting, coverage breadth, sorting, and merging.
为什么软件包爱好者会关心
bedtk is notable because it comes from the lh3 bioinformatics tool lineage and deliberately keeps the surface area small. It is the kind of package a genomics CLI user installs when they care about speed and memory more than a broad command catalog.
时间线
- 2019: Repository created and initial intersection work committed.
- 2021: bedtk paper published in Bioinformatics.
- 2025: v1.0, v1.1, and v1.2 releases published.
Related projects
- bedtools is explicitly named by upstream as broader and more versatile.
- cgranges is linked from the README and is related to the interval-overlap implementation family.
来源
- https://api.github.com/repos/lh3/bedtk
- https://github.com/lh3/bedtk#readme
- https://github.com/lh3/bedtk/releases
- source_facts.package-manager
安全态势
风险级别：绿色
narrow executable package without higher-risk signals.
风险分类器
绿色 风险 · 低 置信度 · appliance
原因
- narrow executable package without higher-risk signals
信号
- metadata:no-higher-risk-signals
安装行为
- formula 元数据中未记录 Homebrew post-install 钩子。
- Homebrew bottle 元数据适用于 6 个平台目标。
建议审查
在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。
可执行文件
已安装的可执行文件
| 命令 | 类型 | 暴露范围 | 备注 |
|---|---|---|---|
bedtk | cli | 全局可执行文件 |
新鲜度
版本和新鲜度
这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。
页面生成时间2026-07-10
管理器版本1.2
管理器更新时间
本地数据OK
上游当前
检测到的最新版本v1.2
- 信息No package-manager update timestamp was available.低 置信度
安装元数据
软件包元数据
| 软件包键 | brew:bedtk |
|---|---|
| 版本 | 1.2 |
| 软件包管理器 | Homebrew |
| 软件包管理器页面 | https://formulae.brew.sh/formula/bedtk |
| 主页 | https://github.com/lh3/bedtk |
| 仓库 | https://github.com/lh3/bedtk |
| 上游文档 | https://github.com/lh3/bedtk#readme |
| 许可证 | MIT |
| 源码归档 | https://github.com/lh3/bedtk/archive/refs/tags/v1.2.tar.gz |
| Bottle | 可用 (于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux) |
| Homebrew post-install | 未定义 |
| 服务 | 未声明 |
注册表事实
源数据库详情
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | bedtk |
| Version Scheme | 0 |
| Revision | 0 |
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
来源线索
由仓库数据生成
此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。
Combined YAML source
View the package source record on GitHub.
使用的来源
- Geiger risk classifier
- Nucleus package database
- av.db category and tag curation
- cross-ecosystem install command graph
- curated package history
- package relationship graph
- package version freshness
- package-page enrichment