Automic VaultAutomic Vault

brew

使用 Homebrew, apt, dnf, Nix 安装 snakemake

查看 snakemake 的安装路径、可执行文件、元数据以及面向 AI 代理工作流的安全说明。

安装命令安全说明

安装

其他安装命令

macOS

Homebrew已验证 · 100%
brew install snakemake

local Homebrew formula metadata

Linux

Debian apt已验证 · 92%
sudo apt install snakemake

Debian stable package indexes · snakemake · 来源: deb.debian.org

Fedora dnf已验证 · 92%
sudo dnf install snakemake

Fedora Rawhide package metadata · snakemake · 来源: dl.fedoraproject.org

Nix已验证 · 92%
nix profile install nixpkgs#snakemake

nixpkgs package indexes · pkgs/by-name/sn/snakemake/package.nix · 来源: api.github.com

概览

软件包摘要

Pythonic workflow system

命令和别名

  • snakemake

历史

项目历史与用法

Snakemake is a Python-based workflow management system for reproducible and scalable data analyses, especially common in bioinformatics and scientific computing.

项目历史

The official citation page identifies the initial Snakemake publication as a 2012 Bioinformatics article, followed by a 2021 rolling paper for ongoing feature updates. The official GitHub README describes Snakemake workflows as human-readable, Python-based definitions that scale from local machines to server, cluster, grid, and cloud environments.

采用历史

The official README reports that Snakemake was receiving more than seven new citations per week in 2021 and had almost 400k downloads at that time. The supplied metadata shows distribution through Homebrew, Debian, Ubuntu, Fedora/DNF, and Nix.

使用方式

Users describe workflows in Snakefiles, define rules, inputs, outputs, and software environments, and run snakemake to build requested targets. The official deployment docs recommend a repository layout with workflow code under workflow/ and configuration under config/, including config/config.yaml examples.

为什么软件包爱好者会关心

Snakemake is significant for package maintainers because it bridges language-level workflow definitions, reproducible software deployment, Conda/container integration, and distribution through multiple OS package managers.

时间线

  • 2012: Initial Snakemake paper published in Bioinformatics.
  • 2019: Current official GitHub repository created.
  • 2021: Sustainable data analysis with Snakemake rolling paper published.
  • 2024: Snakemake 8 release line decomposes functionality into plugins.
  • 2026: Stable documentation tracks Snakemake 9.x.

Related projects

  • Snakemake workflow catalog
  • Snakemake wrappers
  • Snakemake executor plugins
  • Conda
  • Apptainer

安全态势

尚未找到受保护工具覆盖

没有找到 snakemake 的匹配本地密钥处理 manifest。Nucleus 软件包元数据仍在此发布，以便未来覆盖拥有稳定的软件包 URL。

安装行为

  • formula 元数据中未记录 Homebrew post-install 钩子。
  • Homebrew bottle 元数据适用于 6 个平台目标。
  • 安装时包含 6 个运行时依赖。
  • 构建元数据列出 1 个构建依赖。

建议审查

在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。

local files

Configuration and credential file locations

These source-backed paths show where this package keeps local settings or durable credentials. Automic Vault can use them as review targets for secret scanning, migration, and command approval.

Configuration files

Config paths the tool may read or write during local use.

Unix
config/config.yaml

可执行文件

已安装的可执行文件

命令类型暴露范围备注
snakemakecli全局可执行文件

新鲜度

版本和新鲜度

这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。

页面生成时间2026-07-26
管理器版本9.23.1
管理器更新时间2026-07-25
本地数据OK
上游not checked
检测到的最新版本未检测到

https://snakemake.readthedocs.io/

安装元数据

软件包元数据

软件包键brew:snakemake
版本9.23.1
软件包管理器Homebrew
软件包管理器页面https://formulae.brew.sh/formula/snakemake
主页https://snakemake.readthedocs.io/
仓库https://github.com/snakemake/snakemake
上游文档https://snakemake.readthedocs.io/en/stable
许可证MIT
源码归档https://files.pythonhosted.org/packages/9e/c2/45aa858e55edbb7dbc243ed60859f4f3d92d63ecdd67a80632aa3659fe6b/snakemake-9.23.1.tar.gz
最后更新2026-07-25T10:55:01Z
Pulseupdated
依赖cbc, certifi, libyaml, pydantic, python@3.14, rpds-py
构建依赖rust
Bottle可用 (于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux)
Homebrew post-install未定义
服务未声明

注册表事实

源数据库详情

Source DatabaseHomebrew formula API
Taphomebrew/core
Full Namesnakemake
Version Scheme0
Revision2
Head VersionHEAD
Bottle Stable Root URLhttps://ghcr.io/v2/homebrew/core
Deprecatedno
Disabledno
Keg Onlyno
URL Keys
  • head
  • stable

源数据库匹配

其他软件包管理器记录

匹配项来自外部软件包管理器索引，并与本地 Automic Vault 软件包链接分开显示。

Debian apt95%

snakemake 7.32.4-7

pythonic workflow management system

https://snakemake.readthedocs.io/

sudo apt install snakemake
  • Section: science
  • Architecture: all
  • 28 依赖
  • 17 可选依赖
  • normalized package name match
  • 匹配方式：Snakemake
Debian stable package indexes · deb.debian.org · Debian stable package indexes: snakemake from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Debian apt95%

snakemake-doc 7.32.4-7

documentation for pythonic workflow management system

https://snakemake.readthedocs.io/

sudo apt install snakemake-doc
  • Section: doc
  • Architecture: all
  • Source Package: snakemake
  • 4 依赖
  • 1 可选依赖
  • normalized package name match
  • 匹配方式：Snakemake
Debian stable package indexes · deb.debian.org · Debian stable package indexes: snakemake-doc from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Nix95%

snakemake

nix profile install nixpkgs#snakemake
  • normalized package name match
  • 匹配方式：Snakemake
nixpkgs package indexes · api.github.com · nixpkgs package indexes: pkgs/by-name/sn/snakemake/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1
Ubuntu apt95%

snakemake 7.32.4-2

pythonic workflow management system

https://snakemake.readthedocs.io/

sudo apt install snakemake
  • Section: universe/science
  • Architecture: all
  • 29 依赖
  • 17 可选依赖
  • normalized package name match
  • 匹配方式：Snakemake
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: snakemake from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz
Ubuntu apt95%

snakemake-doc 7.32.4-2

documentation for pythonic workflow management system

https://snakemake.readthedocs.io/

sudo apt install snakemake-doc
  • Section: universe/doc
  • Architecture: all
  • Source Package: snakemake
  • 4 依赖
  • 1 可选依赖
  • normalized package name match
  • 匹配方式：Snakemake
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: snakemake-doc from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz
dnf95%

snakemake 9.21.1-3.fc45~bootstrap

Workflow management system to create reproducible and scalable data analyses

https://snakemake.readthedocs.io/en/stable/index.html

sudo dnf install snakemake
  • License: Apache-2.0 AND BSD-2-Clause AND BSD-3-Clause AND ISC AND MIT AND MIT-0
  • Category: Unspecified
  • Architecture: noarch
  • Source Package: snakemake
  • 5 依赖
  • 5 提供
  • normalized package name match
  • 匹配方式：Snakemake
Fedora Rawhide package metadata · dl.fedoraproject.org · Fedora Rawhide package metadata: snakemake from https://dl.fedoraproject.org/pub/fedora/linux/development/rawhide/Everything/x86_64/os/repodata/e5ca8ce900cd68f5419e1c39ae517343100b306336cbaeb70a3c153121d95094-primary.xml.zst
dnf95%

snakemake+reports 9.21.1-3.fc45~bootstrap

Metapackage for snakemake: reports extras

https://snakemake.readthedocs.io/en/stable/index.html

sudo dnf install snakemake+reports
  • License: Apache-2.0 AND BSD-2-Clause AND BSD-3-Clause AND ISC AND MIT AND MIT-0
  • Category: Unspecified
  • Architecture: noarch
  • Source Package: snakemake
  • 3 依赖
  • 3 提供
  • normalized package name match
  • 匹配方式：Snakemake
Fedora Rawhide package metadata · dl.fedoraproject.org · Fedora Rawhide package metadata: snakemake+reports from https://dl.fedoraproject.org/pub/fedora/linux/development/rawhide/Everything/x86_64/os/repodata/e5ca8ce900cd68f5419e1c39ae517343100b306336cbaeb70a3c153121d95094-primary.xml.zst

软件包图谱

链接来自本地软件包关系图、补充数据、依赖边、生态匹配和软件包 hub 归属。

相关工具

  • cbcRuntime dependency declared by Homebrew.
  • python@3.14Runtime dependency declared by Homebrew.
  • rustBuild dependency declared by Homebrew.

相同工作流

  • cromwellShares av.db curated category or tags: bioinformatics, cli, science, workflow-management.
  • btllibShares av.db curated category or tags: bioinformatics, cli, python, science.
  • cutadaptShares av.db curated category or tags: bioinformatics, cli, python, science.
  • abpoaShares av.db curated category or tags: bioinformatics, cli, science.
  • abricateShares av.db curated category or tags: bioinformatics, cli, science.
  • abyssShares av.db curated category or tags: bioinformatics, cli, science.

来源线索

由仓库数据生成

此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。

使用的来源

  • Geiger risk classifier
  • Nucleus package database
  • av.db category and tag curation
  • cross-ecosystem install command graph
  • curated configuration and credential file locations
  • curated package history
  • external package-manager database matches
  • package relationship graph
  • package version freshness
  • package-page enrichment