# 使用 Homebrew, apt 安装 proteinortho

查看 proteinortho 的安装路径、可执行文件、元数据以及面向 AI 代理工作流的安全说明。

## 安装

```sh
sudo av install brew:proteinortho
```

其他安装命令:

### macOS

- Homebrew (100%):

```sh
brew install proteinortho
```

  证据: local Homebrew formula metadata

### Linux

- Debian apt (92%):

```sh
sudo apt install proteinortho
```

  证据: Debian stable package indexes: proteinortho from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz

## 软件包事实

- **软件包键:** brew:proteinortho
- **软件包管理器:** Homebrew
- **软件包管理器页面:** <https://formulae.brew.sh/formula/proteinortho>
- **版本:** 6.3.6
- **来源摘要:** Detecting orthologous genes within different species
- **主页:** <https://gitlab.com/paulklemm_PHD/proteinortho>
- **仓库:** <https://gitlab.com/paulklemm_PHD/proteinortho>
- **上游文档:** <https://gitlab.com/paulklemm_PHD/proteinortho#readme>
- **许可证:** GPL-3.0-or-later
- **源码归档:** <https://gitlab.com/paulklemm_PHD/proteinortho/-/archive/v6.3.6/proteinortho-v6.3.6.tar.gz>
- **最后更新:** 2026-06-25T13:38:03+02:00
- **已生成:** 2026-07-08T18:08:21+00:00

## 可执行文件

- proteinortho (cli)
- proteinortho2html.pl (cli)
- proteinortho2tree.pl (cli)
- proteinortho2xml.pl (cli)
- proteinortho6.pl (cli)
- proteinortho_cleanupblastgraph (cli)
- proteinortho_clustering (cli)
- proteinortho_compareProteinorthoGraphs.pl (cli)
- proteinortho_do_mcl.pl (cli)
- proteinortho_extract_from_graph.pl (cli)
- proteinortho_ffadj_mcs.py (cli)
- proteinortho_formatUsearch.pl (cli)
- proteinortho_grab_proteins.pl (cli)
- proteinortho_graphMinusRemovegraph (cli)
- proteinortho_history.pl (cli)
- proteinortho_singletons.pl (cli)
- proteinortho_summary.pl (cli)
- proteinortho (别名)
- proteinortho2html.pl (别名)
- proteinortho2tree.pl (别名)
- proteinortho2xml.pl (别名)
- proteinortho6.pl (别名)
- proteinortho_cleanupblastgraph (别名)
- proteinortho_clustering (别名)
- proteinortho_compareProteinorthoGraphs.pl (别名)
- proteinortho_do_mcl.pl (别名)
- proteinortho_extract_from_graph.pl (别名)
- proteinortho_ffadj_mcs.py (别名)
- proteinortho_formatUsearch.pl (别名)
- proteinortho_grab_proteins.pl (别名)
- proteinortho_graphMinusRemovegraph (别名)
- proteinortho_history.pl (别名)
- proteinortho_singletons.pl (别名)
- proteinortho_summary.pl (别名)

## 依赖

- diamond
- libomp
- openblas

## 安装行为

- post-install 钩子: 未定义
- Bottle: 可用 于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, arm64_ventura, sonoma, ventura, x86_64_linux

## 版本和新鲜度

- 页面生成时间: 2026-07-08
- 管理器版本: 6.3.6
- 管理器更新时间: 2026-06-25
- 本地数据: OK
- 上游仓库: https://gitlab.com/paulklemm_PHD/proteinortho
- 信息: Release/tag comparison is only available for GitHub repositories.

## 安全说明

infrastructure mutation or orchestration signal.

- **Geiger 风险:** orange / 中
- infrastructure mutation or orchestration signal

## 源数据库详情

- **Source Database:** Homebrew formula API
- **Tap:** homebrew/core
- **Full Name:** proteinortho
- **Version Scheme:** 0
- **Revision:** 0
- **Bottle Stable Root URL:** <https://ghcr.io/v2/homebrew/core>
- **Deprecated:** no
- **Disabled:** no
- **Keg Only:** no
- **URL Keys:** stable

## 其他软件包管理器记录

- Debian apt - proteinortho - 6.3.1+dfsg-1: normalized package name match | Debian stable package indexes: proteinortho from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Detection of (Co-)orthologs in large-scale protein analysis | https://gitlab.com/paulklemm_PHD/proteinortho
- Ubuntu apt - proteinortho - 6.3.1+dfsg-1: normalized package name match | Ubuntu 24.04 LTS package indexes: proteinortho from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | Detection of (Co-)orthologs in large-scale protein analysis | https://gitlab.com/paulklemm_PHD/proteinortho


## 相关链接

- [Secret-risk packages](https://www.automicvault.com/zh-hans/pkg/secret-risk-packages/) - Has protected-tool coverage, approval-gate, or non-low Geiger security signals.
- [Terminal utility packages](https://www.automicvault.com/zh-hans/pkg/terminal-utilities/) - Matched terminal and command-line workflow metadata.
- [Networking and protocol packages](https://www.automicvault.com/zh-hans/pkg/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata.
- [Scientific computing packages](https://www.automicvault.com/zh-hans/pkg/scientific-computing-tools/) - Matched scientific computing metadata.
- [diamond](https://www.automicvault.com/zh-hans/pkg/brew/diamond/) - Runtime dependency declared by Homebrew.
- [abricate](https://www.automicvault.com/zh-hans/pkg/brew/abricate/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [bbtools](https://www.automicvault.com/zh-hans/pkg/brew/bbtools/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [bioperl](https://www.automicvault.com/zh-hans/pkg/brew/bioperl/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [blast](https://www.automicvault.com/zh-hans/pkg/brew/blast/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [bowtie2](https://www.automicvault.com/zh-hans/pkg/brew/bowtie2/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [breseq](https://www.automicvault.com/zh-hans/pkg/brew/breseq/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [echtvar](https://www.automicvault.com/zh-hans/pkg/brew/echtvar/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [fastga](https://www.automicvault.com/zh-hans/pkg/brew/fastga/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [mafft](https://www.automicvault.com/zh-hans/pkg/brew/mafft/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, science, sequence.
- [kalign](https://www.automicvault.com/zh-hans/pkg/brew/kalign/) - Local package facts share a topical domain. Shared terms: analysis, bioinformatics, cli, libomp, science.
- [mmseqs2](https://www.automicvault.com/zh-hans/pkg/brew/mmseqs2/) - Local package facts share a topical domain. Shared terms: analysis, bioinformatics, cli, clustering, libomp.

## Combined YAML source

View the package source record on GitHub. [combined/proteinortho.yml](https://github.com/automic-vault/db/blob/main/combined/proteinortho.yml)


## 来源

- Nucleus package database
- Geiger risk classifier
- package-page enrichment
- package version freshness
- av.db category and tag curation
- package relationship graph
- external package-manager database matches
- cross-ecosystem install command graph