# 使用 Homebrew, apt, Nix 安装 paml

查看 paml 的安装路径、可执行文件、元数据以及面向 AI 代理工作流的安全说明。

## 安装

```sh
sudo av install brew:paml
```

其他安装命令:

### macOS

- Homebrew (100%):

```sh
brew install paml
```

  证据: local Homebrew formula metadata

### Linux

- Debian apt (92%):

```sh
sudo apt install paml
```

  证据: Debian stable package indexes: paml from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz

- Nix (92%):

```sh
nix profile install nixpkgs#paml
```

  证据: nixpkgs package indexes: pkgs/by-name/pa/paml/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1

## 软件包事实

- **软件包键:** brew:paml
- **软件包管理器:** Homebrew
- **软件包管理器页面:** <https://formulae.brew.sh/formula/paml>
- **版本:** 4.10.10
- **来源摘要:** Phylogenetic analyses of DNA or protein sequences using maximum likelihood
- **主页:** <https://github.com/abacus-gene/paml>
- **仓库:** <https://github.com/abacus-gene/paml>
- **上游文档:** <https://github.com/abacus-gene/paml/wiki>
- **许可证:** GPL-3.0-only
- **源码归档:** <https://github.com/abacus-gene/paml/archive/refs/tags/v4.10.10.tar.gz>
- **最后更新:** 2026-05-03T17:51:16+02:00
- **已生成:** 2026-07-08T18:08:21+00:00

## 可执行文件

- baseml (cli)
- basemlg (cli)
- chi2 (cli)
- codeml (cli)
- evolver (cli)
- infinitesites (cli)
- mcmctree (cli)
- pamp (cli)
- yn00 (cli)
- baseml (别名)
- basemlg (别名)
- chi2 (别名)
- codeml (别名)
- evolver (别名)
- infinitesites (别名)
- mcmctree (别名)
- pamp (别名)
- yn00 (别名)

## 安装行为

- post-install 钩子: 未定义
- Bottle: 可用 于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux

## 版本和新鲜度

- 页面生成时间: 2026-07-08
- 管理器版本: 4.10.10
- 管理器更新时间: 2026-05-03
- 本地数据: OK
- 上游仓库: https://github.com/abacus-gene/paml
- 检测到的最新版本: v4.10.10 (当前)

## 安全说明

narrow executable package without higher-risk signals.

- **Geiger 风险:** 绿色 / 低
- narrow executable package without higher-risk signals

## 源数据库详情

- **Source Database:** Homebrew formula API
- **Tap:** homebrew/core
- **Full Name:** paml
- **Version Scheme:** 0
- **Revision:** 0
- **Bottle Stable Root URL:** <https://ghcr.io/v2/homebrew/core>
- **Deprecated:** no
- **Disabled:** no
- **Keg Only:** no
- **URL Keys:** stable

## 其他软件包管理器记录

- Debian apt - paml - 4.9j+dfsg-6: normalized package name match | Debian stable package indexes: paml from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Phylogenetic Analysis by Maximum Likelihood (PAML) | http://abacus.gene.ucl.ac.uk/software/paml.html
- Debian apt - paml-doc - 4.9j+dfsg-6: normalized package name match | Debian stable package indexes: paml-doc from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Documentation for PAML | http://abacus.gene.ucl.ac.uk/software/paml.html
- Nix - paml: normalized package name match | nixpkgs package indexes: pkgs/by-name/pa/paml/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1
- Ubuntu apt - paml - 4.9j+dfsg-4: normalized package name match | Ubuntu 24.04 LTS package indexes: paml from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | Phylogenetic Analysis by Maximum Likelihood (PAML) | http://abacus.gene.ucl.ac.uk/software/paml.html
- Ubuntu apt - paml-doc - 4.9j+dfsg-4: normalized package name match | Ubuntu 24.04 LTS package indexes: paml-doc from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | Documentation for PAML | http://abacus.gene.ucl.ac.uk/software/paml.html
- Debian apt - evolver - 2.70+ds-8: installed executable or alias match | Debian stable package indexes: evolver from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Surface Evolver | https://facstaff.susqu.edu/brakke/evolver/evolver.html
- Debian apt - evolver-doc - 2.70+ds-8: installed executable or alias match | Debian stable package indexes: evolver-doc from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Surface Evolver - doc | https://facstaff.susqu.edu/brakke/evolver/evolver.html
- Debian apt - evolver-nox - 2.70+ds-8+b2: installed executable or alias match | Debian stable package indexes: evolver-nox from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Surface Evolver - with no X support | https://facstaff.susqu.edu/brakke/evolver/evolver.html
- Debian apt - evolver-ogl - 2.70+ds-8+b2: installed executable or alias match | Debian stable package indexes: evolver-ogl from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Surface Evolver - with OpenGL display | https://facstaff.susqu.edu/brakke/evolver/evolver.html


## 相关链接

- [Source-control packages](https://www.automicvault.com/zh-hans/pkg/source-control-tools/) - Belongs to a source-control command family.
- [Terminal utility packages](https://www.automicvault.com/zh-hans/pkg/terminal-utilities/) - Matched terminal and command-line workflow metadata.
- [Networking and protocol packages](https://www.automicvault.com/zh-hans/pkg/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata.
- [Scientific computing packages](https://www.automicvault.com/zh-hans/pkg/scientific-computing-tools/) - Matched scientific computing metadata.
- [fastme](https://www.automicvault.com/zh-hans/pkg/brew/fastme/) - Shares av.db curated category or tags: bioinformatics, cli, phylogenetics, science.
- [trimal](https://www.automicvault.com/zh-hans/pkg/brew/trimal/) - Shares av.db curated category or tags: bioinformatics, cli, phylogenetics, science.
- [veryfasttree](https://www.automicvault.com/zh-hans/pkg/brew/veryfasttree/) - Shares av.db curated category or tags: bioinformatics, cli, phylogenetics, science.
- [iqtree3](https://www.automicvault.com/zh-hans/pkg/brew/iqtree3/) - Shares av.db curated category or tags: bioinformatics, cli, maximum-likelihood, phylogenetics, science.
- [raxml-ng](https://www.automicvault.com/zh-hans/pkg/brew/raxml-ng/) - Shares av.db curated category or tags: bioinformatics, cli, maximum-likelihood, phylogenetics, science.
- [bbtools](https://www.automicvault.com/zh-hans/pkg/brew/bbtools/) - Shares av.db curated category or tags: bioinformatics, cli, dna, science.
- [breseq](https://www.automicvault.com/zh-hans/pkg/brew/breseq/) - Shares av.db curated category or tags: bioinformatics, cli, dna, science.
- [bwa](https://www.automicvault.com/zh-hans/pkg/brew/bwa/) - Shares av.db curated category or tags: bioinformatics, cli, dna, science.
- [kalign](https://www.automicvault.com/zh-hans/pkg/brew/kalign/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, dna, protein, science.
- [mummer](https://www.automicvault.com/zh-hans/pkg/brew/mummer/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, dna, protein, science.

## Combined YAML source

View the package source record on GitHub. [combined/paml.yml](https://github.com/automic-vault/db/blob/main/combined/paml.yml)


## 来源

- Nucleus package database
- Geiger risk classifier
- package-page enrichment
- package version freshness
- av.db category and tag curation
- package relationship graph
- external package-manager database matches
- cross-ecosystem install command graph