Automic VaultAutomic Vault

brew

使用 Homebrew, apt, Nix 安装 paml

查看 paml 的安装路径、可执行文件、元数据以及面向 AI 代理工作流的安全说明。

安装命令安全说明

安装

其他安装命令

macOS

Homebrew已验证 · 100%
brew install paml

local Homebrew formula metadata

Linux

Debian apt已验证 · 92%
sudo apt install paml

Debian stable package indexes · paml · 来源: deb.debian.org

Nix已验证 · 92%
nix profile install nixpkgs#paml

nixpkgs package indexes · pkgs/by-name/pa/paml/package.nix · 来源: api.github.com

概览

软件包摘要

Phylogenetic analyses of DNA or protein sequences using maximum likelihood

命令和别名

  • baseml
  • basemlg
  • chi2
  • codeml
  • evolver
  • infinitesites
  • mcmctree
  • pamp
  • yn00

安全态势

风险级别：绿色

narrow executable package without higher-risk signals.

风险分类器

绿色 风险 · 低 置信度 · appliance

原因

  • narrow executable package without higher-risk signals

信号

  • metadata:no-higher-risk-signals

安装行为

  • formula 元数据中未记录 Homebrew post-install 钩子。
  • Homebrew bottle 元数据适用于 6 个平台目标。

建议审查

在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。

可执行文件

已安装的可执行文件

命令类型暴露范围备注
basemlcli全局可执行文件
basemlgcli全局可执行文件
chi2cli全局可执行文件
codemlcli全局可执行文件
evolvercli全局可执行文件
infinitesitescli全局可执行文件
mcmctreecli全局可执行文件
pampcli全局可执行文件
yn00cli全局可执行文件

新鲜度

版本和新鲜度

这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。

页面生成时间2026-07-08
管理器版本4.10.10
管理器更新时间2026-05-03
本地数据OK
上游当前
检测到的最新版本v4.10.10

https://github.com/abacus-gene/paml

  • OK没有生成新鲜度警告。

安装元数据

软件包元数据

软件包键brew:paml
版本4.10.10
软件包管理器Homebrew
软件包管理器页面https://formulae.brew.sh/formula/paml
主页https://github.com/abacus-gene/paml
仓库https://github.com/abacus-gene/paml
上游文档https://github.com/abacus-gene/paml/wiki
许可证GPL-3.0-only
源码归档https://github.com/abacus-gene/paml/archive/refs/tags/v4.10.10.tar.gz
最后更新2026-05-03T17:51:16+02:00
Pulseupdated
Bottle可用 (于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux)
Homebrew post-install未定义
服务未声明

注册表事实

源数据库详情

Source DatabaseHomebrew formula API
Taphomebrew/core
Full Namepaml
Version Scheme0
Revision0
Bottle Stable Root URLhttps://ghcr.io/v2/homebrew/core
Deprecatedno
Disabledno
Keg Onlyno
URL Keys
  • stable

源数据库匹配

其他软件包管理器记录

匹配项来自外部软件包管理器索引，并与本地 Automic Vault 软件包链接分开显示。

Debian apt95%

paml 4.9j+dfsg-6

Phylogenetic Analysis by Maximum Likelihood (PAML)

http://abacus.gene.ucl.ac.uk/software/paml.html

sudo apt install paml
  • Section: science
  • Architecture: amd64
  • 1 依赖
  • normalized package name match
  • 匹配方式：Paml
Debian stable package indexes · deb.debian.org · Debian stable package indexes: paml from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Debian apt95%

paml-doc 4.9j+dfsg-6

Documentation for PAML

http://abacus.gene.ucl.ac.uk/software/paml.html

sudo apt install paml-doc
  • Section: doc
  • Architecture: all
  • Source Package: paml
  • normalized package name match
  • 匹配方式：Paml
Debian stable package indexes · deb.debian.org · Debian stable package indexes: paml-doc from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Nix95%

paml

nix profile install nixpkgs#paml
  • normalized package name match
  • 匹配方式：Paml
nixpkgs package indexes · api.github.com · nixpkgs package indexes: pkgs/by-name/pa/paml/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1
Ubuntu apt95%

paml 4.9j+dfsg-4

Phylogenetic Analysis by Maximum Likelihood (PAML)

http://abacus.gene.ucl.ac.uk/software/paml.html

sudo apt install paml
  • Section: universe/science
  • Architecture: amd64
  • 1 依赖
  • normalized package name match
  • 匹配方式：Paml
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: paml from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz
Ubuntu apt95%

paml-doc 4.9j+dfsg-4

Documentation for PAML

http://abacus.gene.ucl.ac.uk/software/paml.html

sudo apt install paml-doc
  • Section: universe/doc
  • Architecture: all
  • Source Package: paml
  • normalized package name match
  • 匹配方式：Paml
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: paml-doc from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz
Debian apt92%

evolver 2.70+ds-8

Surface Evolver

https://facstaff.susqu.edu/brakke/evolver/evolver.html

sudo apt install evolver
  • Section: math
  • Architecture: all
  • 2 依赖
  • installed executable or alias match
  • 匹配方式：Evolver
Debian stable package indexes · deb.debian.org · Debian stable package indexes: evolver from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Debian apt92%

evolver-doc 2.70+ds-8

Surface Evolver - doc

https://facstaff.susqu.edu/brakke/evolver/evolver.html

sudo apt install evolver-doc
  • Section: doc
  • Architecture: all
  • Source Package: evolver
  • 2 可选依赖
  • installed executable or alias match
  • 匹配方式：Evolver
Debian stable package indexes · deb.debian.org · Debian stable package indexes: evolver-doc from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Debian apt92%

evolver-nox 2.70+ds-8+b2

Surface Evolver - with no X support

https://facstaff.susqu.edu/brakke/evolver/evolver.html

sudo apt install evolver-nox
  • Section: math
  • Architecture: amd64
  • Source Package: evolver
  • 3 依赖
  • 1 提供
  • 2 可选依赖
  • installed executable or alias match
  • 匹配方式：Evolver
Debian stable package indexes · deb.debian.org · Debian stable package indexes: evolver-nox from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Debian apt92%

evolver-ogl 2.70+ds-8+b2

Surface Evolver - with OpenGL display

https://facstaff.susqu.edu/brakke/evolver/evolver.html

sudo apt install evolver-ogl
  • Section: math
  • Architecture: amd64
  • Source Package: evolver
  • 7 依赖
  • 1 提供
  • 2 可选依赖
  • installed executable or alias match
  • 匹配方式：Evolver
Debian stable package indexes · deb.debian.org · Debian stable package indexes: evolver-ogl from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz

软件包图谱

链接来自本地软件包关系图、补充数据、依赖边、生态匹配和软件包 hub 归属。

相同工作流

  • fastmeShares av.db curated category or tags: bioinformatics, cli, phylogenetics, science.
  • trimalShares av.db curated category or tags: bioinformatics, cli, phylogenetics, science.
  • veryfasttreeShares av.db curated category or tags: bioinformatics, cli, phylogenetics, science.
  • iqtree3Shares av.db curated category or tags: bioinformatics, cli, maximum-likelihood, phylogenetics, science.
  • raxml-ngShares av.db curated category or tags: bioinformatics, cli, maximum-likelihood, phylogenetics, science.
  • bbtoolsShares av.db curated category or tags: bioinformatics, cli, dna, science.

来源线索

由仓库数据生成

此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。

使用的来源

  • Geiger risk classifier
  • Nucleus package database
  • av.db category and tag curation
  • cross-ecosystem install command graph
  • external package-manager database matches
  • package relationship graph
  • package version freshness
  • package-page enrichment