# 使用 Homebrew, apt, Nix, winget 安装 mrbayes 查看 mrbayes 的安装路径、可执行文件、元数据以及面向 AI 代理工作流的安全说明。 ## 安装 ```sh sudo av install brew:mrbayes ``` 其他安装命令: ### macOS - Homebrew (100%): ```sh brew install mrbayes ``` 证据: local Homebrew formula metadata ### Linux - Debian apt (92%): ```sh sudo apt install mrbayes ``` 证据: Debian stable package indexes: mrbayes from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz - Nix (92%): ```sh nix profile install nixpkgs#mrbayes ``` 证据: nixpkgs package indexes: pkgs/by-name/mr/mrbayes/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1 ### Windows - winget (92%): ```sh winget install --id NBIS.MrBayes -e ``` 证据: Windows Package Manager source index: NBIS.MrBayes from https://cdn.winget.microsoft.com/cache/source.msix ## 软件包事实 - **软件包键:** brew:mrbayes - **软件包管理器:** Homebrew - **软件包管理器页面:** - **版本:** 3.2.7a - **来源摘要:** Bayesian inference of phylogenies and evolutionary models - **主页:** - **仓库:** - **上游文档:** - **许可证:** GPL-3.0-or-later - **源码归档:** - **已生成:** 2026-07-08T18:08:21+00:00 ## 可执行文件 - mb (cli) - mb (别名) ## 依赖 - beagle - open-mpi ## 构建依赖 - pkgconf ## 安装行为 - post-install 钩子: 未定义 - Bottle: 可用 于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux ## 版本和新鲜度 - 页面生成时间: 2026-07-08 - 管理器版本: 3.2.7a - 本地数据: OK - 上游仓库: https://github.com/NBISweden/MrBayes - 信息: No package-manager update timestamp was available. - 信息: No cached GitHub release or tag data was available. ## 项目历史与用法 MrBayes is a phylogenetics program for Bayesian inference and model choice across evolutionary models. John P. Huelsenbeck and Fredrik Ronquist introduced MRBAYES in Bioinformatics in 2001 as software for Bayesian inference of phylogeny using a variant of Markov chain Monte Carlo. The project later became associated with MrBayes 3, cited for Bayesian phylogenetic inference under mixed models, and MrBayes 3.2, cited for efficient inference and model selection across a large model space. ### 项目历史 The program's technical role is to make Bayesian phylogenetic analysis accessible through a command-line tool named mb. The official site lists support for nucleotide, amino-acid, restriction-site, and morphological data; mixed data types in one analysis; partitioned models with linked or unlinked parameters; many nucleotide and amino-acid rate matrices; clock trees; topology constraints; convergence diagnostics; stepping-stone model-likelihood estimation; MPI parallel jobs; BEAGLE acceleration; and checkpointing. ### 使用方式 MrBayes is a research package more than a general developer tool. Its manual says new users are served by a manual with tutorials, model discussions, FAQ material, and differences between versions 2 and 3, while published analyses are expected to cite the relevant MrBayes papers and optional parallel or BEAGLE-method papers. The GitHub repository notes that after release 3.2.6 in November 2015 the project entered maintenance mode under the National Bioinformatics Infrastructure Sweden, with the original development team still involved and future work oriented mainly toward bug fixes. Package managers expose it as a command-line scientific application for reproducible phylogenetic workflows. ### 来源 - - - - - - ## 安全说明 narrow executable package without higher-risk signals. - **Geiger 风险:** 绿色 / 低 - narrow executable package without higher-risk signals ## 源数据库详情 - **Source Database:** Homebrew formula API - **Tap:** homebrew/core - **Full Name:** mrbayes - **Version Scheme:** 0 - **Revision:** 0 - **Head Version:** HEAD - **Bottle Stable Root URL:** - **Deprecated:** no - **Disabled:** no - **Keg Only:** no - **URL Keys:** head, stable ## 其他软件包管理器记录 - Debian apt - mrbayes - 3.2.7a-7+b1: normalized package name match | Debian stable package indexes: mrbayes from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Bayesian Inference of Phylogeny | http://mrbayes.csit.fsu.edu/ - Debian apt - mrbayes-doc - 3.2.7a-7: normalized package name match | Debian stable package indexes: mrbayes-doc from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Bayesian Inference of Phylogeny - manual | http://mrbayes.csit.fsu.edu/ - Debian apt - mrbayes-mpi - 3.2.7a-7+b1: normalized package name match | Debian stable package indexes: mrbayes-mpi from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Bayesian Inference of Phylogeny - mpi version | http://mrbayes.csit.fsu.edu/ - Nix - mrbayes: normalized package name match | nixpkgs package indexes: pkgs/by-name/mr/mrbayes/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1 - Ubuntu apt - mrbayes - 3.2.7a-7build2: normalized package name match | Ubuntu 24.04 LTS package indexes: mrbayes from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | Bayesian Inference of Phylogeny | http://mrbayes.csit.fsu.edu/ - Ubuntu apt - mrbayes-doc - 3.2.7a-7build2: normalized package name match | Ubuntu 24.04 LTS package indexes: mrbayes-doc from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | Bayesian Inference of Phylogeny - manual | http://mrbayes.csit.fsu.edu/ - Ubuntu apt - mrbayes-mpi - 3.2.7a-7build2: normalized package name match | Ubuntu 24.04 LTS package indexes: mrbayes-mpi from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | Bayesian Inference of Phylogeny - mpi version | http://mrbayes.csit.fsu.edu/ - winget - NBIS.MrBayes: normalized package name match | Windows Package Manager source index: NBIS.MrBayes from https://cdn.winget.microsoft.com/cache/source.msix ## 相关链接 - [Source-control packages](https://www.automicvault.com/zh-hans/pkg/source-control-tools/) - Belongs to a source-control command family. - [Terminal utility packages](https://www.automicvault.com/zh-hans/pkg/terminal-utilities/) - Matched terminal and command-line workflow metadata. - [Networking and protocol packages](https://www.automicvault.com/zh-hans/pkg/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata. - [Scientific computing packages](https://www.automicvault.com/zh-hans/pkg/scientific-computing-tools/) - Matched scientific computing metadata. - [open-mpi](https://www.automicvault.com/zh-hans/pkg/brew/open-mpi/) - Runtime dependency declared by Homebrew. - [pkgconf](https://www.automicvault.com/zh-hans/pkg/brew/pkgconf/) - Build dependency declared by Homebrew. - [fastme](https://www.automicvault.com/zh-hans/pkg/brew/fastme/) - Shares av.db curated category or tags: bioinformatics, cli, phylogenetics, science. - [hyphy](https://www.automicvault.com/zh-hans/pkg/brew/hyphy/) - Shares av.db curated category or tags: bioinformatics, cli, phylogenetics, science. - [paml](https://www.automicvault.com/zh-hans/pkg/brew/paml/) - Shares av.db curated category or tags: bioinformatics, cli, phylogenetics, science. - [raxml-ng](https://www.automicvault.com/zh-hans/pkg/brew/raxml-ng/) - Shares av.db curated category or tags: bioinformatics, cli, phylogenetics, science. - [trimal](https://www.automicvault.com/zh-hans/pkg/brew/trimal/) - Shares av.db curated category or tags: bioinformatics, cli, phylogenetics, science. - [veryfasttree](https://www.automicvault.com/zh-hans/pkg/brew/veryfasttree/) - Shares av.db curated category or tags: bioinformatics, cli, phylogenetics, science. - [abpoa](https://www.automicvault.com/zh-hans/pkg/brew/abpoa/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [abricate](https://www.automicvault.com/zh-hans/pkg/brew/abricate/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [abyss](https://www.automicvault.com/zh-hans/pkg/brew/abyss/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, mpi, open, open-mpi. ## Combined YAML source View the package source record on GitHub. [combined/mrbayes.yml](https://github.com/automic-vault/db/blob/main/combined/mrbayes.yml) ## 来源 - Nucleus package database - Geiger risk classifier - package-page enrichment - curated package history - package version freshness - av.db category and tag curation - package relationship graph - external package-manager database matches - cross-ecosystem install command graph