macOS
Homebrew已验证 · 100%
brew install minigraphlocal Homebrew formula metadata
安装
其他安装命令
概览
软件包摘要
Proof-of-concept seq-to-graph mapper and graph generator
历史
项目历史与用法
minigraph is Heng Li's sequence-to-graph mapper and pangenome graph generator. The GitHub project describes it as a tool that aligns query sequences against a sequence graph and incrementally augments that graph with long divergent subsequences; the project documentation also notes that a significant portion of the source derives from minimap2, Li's pairwise nucleotide aligner.
项目历史
The tool sits in the pangenome era of bioinformatics, where multiple high-quality assemblies are represented as a graph rather than flattened into one linear reference. The 2020 Genome Biology paper by Li, Feng, and Chu introduced the design and construction of reference pangenome graphs with minigraph, including a graph-based data model and formats intended to preserve coordinates against a linear reference. The command-line workflow maps sequences to sequences or graphs, emits PAF/GAF-style mappings, builds rGFA graphs from reference and sample assemblies, and can feed structural-variation extraction through gfatools.
使用方式
Its adoption history is tied to pangenome-reference research rather than general-purpose package use. Later Minigraph-Cactus work used minigraph to construct a structural-variation graph from input assemblies before Cactus refined it into richer pangenome graph outputs, and that pipeline demonstrated scaling to 90 human haplotypes from the Human Pangenome Reference Consortium. In package managers, minigraph is a specialist bioinformatics CLI for researchers building or testing genome graphs, often alongside minimap2, gfatools, vg, Cactus, and Bioconda-style scientific software stacks.
来源
- https://formulae.brew.sh/formula/minigraph
- https://github.com/ComparativeGenomicsToolkit/cactus/blob/master/doc/pangenome.md
- https://github.com/lh3/minigraph
- https://lh3.github.io/minigraph/
- https://link.springer.com/article/10.1186/s13059-020-02168-z
- https://profiles.wustl.edu/en/publications/pangenome-graph-construction-from-genome-alignments-with-minigrap
- https://pubmed.ncbi.nlm.nih.gov/33066802/
安全态势
风险级别：绿色
narrow executable package without higher-risk signals.
风险分类器
绿色 风险 · 低 置信度 · appliance
原因
- narrow executable package without higher-risk signals
信号
- metadata:no-higher-risk-signals
安装行为
- formula 元数据中未记录 Homebrew post-install 钩子。
- Homebrew bottle 元数据适用于 6 个平台目标。
建议审查
在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。
可执行文件
已安装的可执行文件
| 命令 | 类型 | 暴露范围 | 备注 |
|---|---|---|---|
minigraph | cli | 全局可执行文件 |
新鲜度
版本和新鲜度
这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。
页面生成时间2026-07-08
管理器版本0.21
管理器更新时间
本地数据OK
上游当前
检测到的最新版本v0.21
https://github.com/lh3/minigraph
- 信息No package-manager update timestamp was available.低 置信度
安装元数据
软件包元数据
| 软件包键 | brew:minigraph |
|---|---|
| 版本 | 0.21 |
| 软件包管理器 | Homebrew |
| 软件包管理器页面 | https://formulae.brew.sh/formula/minigraph |
| 主页 | https://lh3.github.io/minigraph |
| 仓库 | https://github.com/lh3/minigraph |
| 上游文档 | https://github.com/lh3/minigraph#readme |
| 许可证 | MIT |
| 源码归档 | https://github.com/lh3/minigraph/archive/refs/tags/v0.21.tar.gz |
| Bottle | 可用 (于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux) |
| Homebrew post-install | 未定义 |
| 服务 | 未声明 |
注册表事实
源数据库详情
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | minigraph |
| Version Scheme | 0 |
| Revision | 0 |
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
来源线索
由仓库数据生成
此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。
Combined YAML source
View the package source record on GitHub.
使用的来源
- Geiger risk classifier
- Nucleus package database
- av.db category and tag curation
- cross-ecosystem install command graph
- curated package history
- package relationship graph
- package version freshness
- package-page enrichment