# 安装 bioperl

查看 bioperl 的安装路径、可执行文件、元数据以及面向 AI 代理工作流的安全说明。

## 安装

```sh
sudo av install brew:bioperl
```

其他安装命令:

### macOS

- Homebrew (100%):

```sh
brew install bioperl
```

  证据: local Homebrew formula metadata

### Linux

- Debian apt (92%):

```sh
sudo apt install bioperl
```

  证据: Debian stable package indexes: bioperl from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz

## 软件包事实

- **软件包键:** brew:bioperl
- **软件包管理器:** Homebrew
- **软件包管理器页面:** <https://formulae.brew.sh/formula/bioperl>
- **版本:** 1.7.8
- **来源摘要:** Perl tools for bioinformatics, genomics and life science
- **主页:** <https://bioperl.org>
- **上游文档:** <https://bioperl.org>
- **许可证:** Artistic-1.0-Perl OR GPL-1.0-or-later
- **源码归档:** <https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/BioPerl-1.7.8.tar.gz>
- **更新:** 2026-04-20T03:46:02Z
- **生成来源:** 2026-05-27T17:15:27+00:00

## 可执行文件

- bp_aacomp (cli)
- bp_bioflat_index (cli)
- bp_biogetseq (cli)
- bp_dbsplit (cli)
- bp_extract_feature_seq (cli)
- bp_fastam9_to_table (cli)
- bp_fetch (cli)
- bp_filter_search (cli)
- bp_find-blast-matches (cli)
- bp_gccalc (cli)
- bp_genbank2gff3 (cli)
- bp_index (cli)
- bp_local_taxonomydb_query (cli)
- bp_make_mrna_protein (cli)
- bp_mask_by_search (cli)
- bp_mrtrans (cli)
- bp_mutate (cli)
- bp_nexus2nh (cli)
- bp_nrdb (cli)
- bp_oligo_count (cli)
- bp_process_gadfly (cli)
- bp_process_sgd (cli)
- bp_revtrans-motif (cli)
- bp_search2alnblocks (cli)
- bp_search2gff (cli)
- bp_search2table (cli)
- bp_search2tribe (cli)
- bp_seq_length (cli)
- bp_seqconvert (cli)
- bp_seqcut (cli)
- bp_seqpart (cli)
- bp_seqret (cli)
- bp_seqretsplit (cli)
- bp_split_seq (cli)
- bp_sreformat (cli)
- bp_taxid4species (cli)
- bp_taxonomy2tree (cli)
- bp_translate_seq (cli)
- bp_tree2pag (cli)
- bp_unflatten_seq (cli)
- bp_aacomp (别名)
- bp_bioflat_index (别名)
- bp_biogetseq (别名)
- bp_dbsplit (别名)
- bp_extract_feature_seq (别名)
- bp_fastam9_to_table (别名)
- bp_fetch (别名)
- bp_filter_search (别名)
- bp_find-blast-matches (别名)
- bp_gccalc (别名)
- bp_genbank2gff3 (别名)
- bp_index (别名)
- bp_local_taxonomydb_query (别名)
- bp_make_mrna_protein (别名)
- bp_mask_by_search (别名)
- bp_mrtrans (别名)
- bp_mutate (别名)
- bp_nexus2nh (别名)
- bp_nrdb (别名)
- bp_oligo_count (别名)
- bp_process_gadfly (别名)
- bp_process_sgd (别名)
- bp_revtrans-motif (别名)
- bp_search2alnblocks (别名)
- bp_search2gff (别名)
- bp_search2table (别名)
- bp_search2tribe (别名)
- bp_seq_length (别名)
- bp_seqconvert (别名)
- bp_seqcut (别名)
- bp_seqpart (别名)
- bp_seqret (别名)
- bp_seqretsplit (别名)
- bp_split_seq (别名)
- bp_sreformat (别名)
- bp_taxid4species (别名)
- bp_taxonomy2tree (别名)
- bp_translate_seq (别名)
- bp_tree2pag (别名)
- bp_unflatten_seq (别名)

## 构建依赖

- pkgconf

## macOS 提供的库

- expat
- libxml2
- perl

## 安装行为

- post-install 钩子: 未定义
- Bottle: 可用 于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux

## 新鲜度

- 页面生成时间: 2026-05-27
- 管理器版本: 1.7.8
- 管理器更新时间: 2026-04-20
- 本地数据: ok
- 上游仓库: https://bioperl.org
- info: Release/tag comparison is only available for GitHub repositories.

## 安全说明

narrow executable package without higher-risk signals.

- **Geiger 风险:** green / low
- narrow executable package without higher-risk signals

## 相关链接

- [pkgconf](https://www.automicvault.com/pkg/brew/pkgconf/) - Build dependency declared by Homebrew.
- [abricate](https://www.automicvault.com/pkg/brew/abricate/) - Popular package that depends on this formula.

## 来源

- Nucleus package database
- Geiger risk classifier
- package-page enrichment
- package version freshness
- package relationship graph
- cross-ecosystem install command graph