# 使用 Homebrew 安装 bbtools

查看 bbtools 的安装路径、可执行文件、元数据以及面向 AI 代理工作流的安全说明。

## 安装

```sh
sudo av install brew:bbtools
```

其他安装命令:

### macOS

- Homebrew (100%):

```sh
brew install bbtools
```

  证据: local Homebrew formula metadata

## 软件包事实

- **软件包键:** brew:bbtools
- **软件包管理器:** Homebrew
- **软件包管理器页面:** <https://formulae.brew.sh/formula/bbtools>
- **版本:** 39.94
- **来源摘要:** Brian Bushnell's tools for manipulating reads
- **主页:** <https://bbmap.org/>
- **仓库:** <https://github.com/bbushnell/BBTools>
- **上游文档:** <https://bbmap.org/docs>
- **许可证:** BSD-3-Clause
- **源码归档:** <https://downloads.sourceforge.net/bbmap/BBMap_39.94.tar.gz>
- **最后更新:** 2026-07-06T08:10:17Z
- **已生成:** 2026-07-08T18:08:21+00:00

## 可执行文件

- a_sample_mt.sh (cli)
- addadapters.sh (cli)
- addssu.sh (cli)
- adjusthomopolymers.sh (cli)
- alignrandom.sh (cli)
- alltoall.sh (cli)
- analyzeaccession.sh (cli)
- analyzegenes.sh (cli)
- analyzesketchresults.sh (cli)
- applyvariants.sh (cli)
- bamlinestreamer.sh (cli)
- bandedaligner.sh (cli)
- bandedplusaligner.sh (cli)
- bbcms.sh (cli)
- bbcountunique.sh (cli)
- bbcrisprfinder.sh (cli)
- bbduk.sh (cli)
- bbdukOld.sh (cli)
- bbdukS.sh (cli)
- bbest.sh (cli)
- bbfakereads.sh (cli)
- bbmap.sh (cli)
- bbmapskimmer.sh (cli)
- bbmask.sh (cli)
- bbmerge-auto.sh (cli)
- bbmerge.sh (cli)
- bbnorm.sh (cli)
- bbrealign.sh (cli)
- bbrename.sh (cli)
- bbsketch.sh (cli)
- bbsort.sh (cli)
- bbsplit.sh (cli)
- bbsplitpairs.sh (cli)
- bbstats.sh (cli)
- bbversion.sh (cli)
- bbwrap.sh (cli)
- bloomfilter.sh (cli)
- bloomfilterparser.sh (cli)
- calcmem.sh (cli)
- calctruequality.sh (cli)
- callgenes.sh (cli)
- callpeaks.sh (cli)
- callvariants.sh (cli)
- callvariants2.sh (cli)
- cat.sh (cli)
- cbcl2text.sh (cli)
- cg2illumina.sh (cli)
- checkstrand.sh (cli)
- cladeloader.sh (cli)
- cladeserver.sh (cli)
- cloudplot.sh (cli)
- clumpify.sh (cli)
- commonkmers.sh (cli)
- comparegff.sh (cli)
- comparelabels.sh (cli)
- comparesketch.sh (cli)
- comparessu.sh (cli)
- comparevcf.sh (cli)
- consect.sh (cli)
- consensus.sh (cli)
- copyfile.sh (cli)
- countbarcodes.sh (cli)
- countbarcodes2.sh (cli)
- countduplicates.sh (cli)
- countgc.sh (cli)
- countsharedlines.sh (cli)
- covmaker.sh (cli)
- crossblock.sh (cli)
- crosscontaminate.sh (cli)
- crosscutaligner.sh (cli)
- cutgff.sh (cli)
- cutprimers.sh (cli)
- ddlblacklist.sh (cli)
- ddlcalibrate.sh (cli)
- ddlcompare.sh (cli)
- ddlmerger.sh (cli)
- ddlwriter.sh (cli)
- decontaminate.sh (cli)
- dedupe.sh (cli)
- dedupe2.sh (cli)
- dedupebymapping.sh (cli)
- demuxbyname.sh (cli)
- demuxserver.sh (cli)
- diskbench.sh (cli)
- dlctieraccuracy.sh (cli)
- driftingaligner.sh (cli)
- driftingplusaligner.sh (cli)
- estherfilter.sh (cli)
- explodetree.sh (cli)
- fastqscan.sh (cli)
- fetchproks.sh (cli)
- filescan.sh (cli)
- filterassemblysummary.sh (cli)
- filterbarcodes.sh (cli)
- filterbycoverage.sh (cli)
- filterbyname.sh (cli)
- filterbysequence.sh (cli)
- filterbytaxa.sh (cli)
- filterbytile.sh (cli)
- filterlines.sh (cli)
- filtersam.sh (cli)
- filtersilva.sh (cli)
- filtersubs.sh (cli)
- filtervcf.sh (cli)
- findrepeats.sh (cli)
- findssu.sh (cli)
- fix_script_paths.sh (cli)
- fixgaps.sh (cli)
- fll2simulate.sh (cli)
- fungalrelease.sh (cli)
- fuse.sh (cli)
- gbff2gff.sh (cli)
- getreads.sh (cli)
- gi2ancestors.sh (cli)
- gi2taxid.sh (cli)
- gitable.sh (cli)
- glocalaligner.sh (cli)
- gradebins.sh (cli)
- grademerge.sh (cli)
- gradesam.sh (cli)
- icecreamfinder.sh (cli)
- icecreamgrader.sh (cli)
- icecreammaker.sh (cli)
- idmatrix.sh (cli)
- idtree.sh (cli)
- indelfree.sh (cli)
- invertkey.sh (cli)
- javasetup.sh (cli)
- kapastats.sh (cli)
- kcompress.sh (cli)
- keepbestcopy.sh (cli)
- khist.sh (cli)
- kmercountexact.sh (cli)
- kmercountmulti.sh (cli)
- kmercountshort.sh (cli)
- kmercoverage.sh (cli)
- kmerfilterset.sh (cli)
- kmerlimit.sh (cli)
- kmerlimit2.sh (cli)
- kmerposition.sh (cli)
- kmutate.sh (cli)
- lilypad.sh (cli)
- loadreads.sh (cli)
- loglog.sh (cli)
- lowcomplexcalibrate.sh (cli)
- makechimeras.sh (cli)
- makecontaminatedgenomes.sh (cli)
- makepolymers.sh (cli)
- makequickbinvector.sh (cli)
- mantissacompare.sh (cli)
- mapPacBio.sh (cli)
- matrixtocolumns.sh (cli)
- memdetect.sh (cli)
- mergeOTUs.sh (cli)
- mergebarcodes.sh (cli)
- mergepgm.sh (cli)
- mergeribo.sh (cli)
- mergesam.sh (cli)
- mergesketch.sh (cli)
- mergesorted.sh (cli)
- microalign.sh (cli)
- msa.sh (cli)
- mutate.sh (cli)
- muxbyname.sh (cli)
- netfilter.sh (cli)
- novademux.sh (cli)
- parallelogram.sh (cli)
- partition.sh (cli)
- phylip2fasta.sh (cli)
- picksubset.sh (cli)
- pileup.sh (cli)
- pileup2.sh (cli)
- plotflowcell.sh (cli)
- plotgc.sh (cli)
- plothist.sh (cli)
- plotreadposition.sh (cli)
- polyfilter.sh (cli)
- postfilter.sh (cli)
- printtime.sh (cli)
- processfrag.sh (cli)
- processhi-c.sh (cli)
- processspeed.sh (cli)
- profile.sh (cli)
- quabblealigner.sh (cli)
- quantumaligner.sh (cli)
- quickbin.sh (cli)
- quickclade.sh (cli)
- randomgenome.sh (cli)
- randomreads.sh (cli)
- randomreadsmg.sh (cli)
- readlength.sh (cli)
- reassemble.sh (cli)
- reducecolumns.sh (cli)
- reducesilva.sh (cli)
- reformat.sh (cli)
- reformat2.sh (cli)
- reformat3.sh (cli)
- reformatpb.sh (cli)
- removebadbarcodes.sh (cli)
- removecatdogmousehuman.sh (cli)
- removehuman.sh (cli)
- removehuman2.sh (cli)
- removemicrobes.sh (cli)
- removesmartbell.sh (cli)
- rename.sh (cli)
- renamebymapping.sh (cli)
- renamebysketch.sh (cli)
- renameimg.sh (cli)
- renameref.sh (cli)
- repair.sh (cli)
- replaceheaders.sh (cli)
- representative.sh (cli)
- rqcfilter.sh (cli)
- rqcfilter2.sh (cli)
- rqcfilter3.sh (cli)
- runhmm.sh (cli)
- samstreamer.sh (cli)
- samtoroc.sh (cli)
- scalarintervals.sh (cli)
- scalars.sh (cli)
- scoresequence.sh (cli)
- scrabblealigner.sh (cli)
- seal.sh (cli)
- sendclade.sh (cli)
- sendsketch.sh (cli)
- seqtovec.sh (cli)
- shred.sh (cli)
- shrinkaccession.sh (cli)
- shuffle.sh (cli)
- shuffle2.sh (cli)
- sketch.sh (cli)
- sketchblacklist.sh (cli)
- sketchblacklist2.sh (cli)
- smithwaterman.sh (cli)
- sortbyname.sh (cli)
- splitbytaxa.sh (cli)
- splitnextera.sh (cli)
- splitribo.sh (cli)
- splitsam.sh (cli)
- splitsam4way.sh (cli)
- splitsam6way.sh (cli)
- ssuserver.sh (cli)
- stats.sh (cli)
- stats3.sh (cli)
- statswrapper.sh (cli)
- stream.sh (cli)
- streamsam.sh (cli)
- subsketch.sh (cli)
- summarizecontam.sh (cli)
- summarizecoverage.sh (cli)
- summarizecrossblock.sh (cli)
- summarizemerge.sh (cli)
- summarizequast.sh (cli)
- summarizescafstats.sh (cli)
- summarizeseal.sh (cli)
- summarizesketch.sh (cli)
- synthmda.sh (cli)
- tadpipe.sh (cli)
- tadpole.sh (cli)
- tadwrapper.sh (cli)
- tagandmerge.sh (cli)
- taxonomy.sh (cli)
- taxserver.sh (cli)
- taxsize.sh (cli)
- taxtree.sh (cli)
- testaligners.sh (cli)
- testaligners2.sh (cli)
- testalignersbatch.sh (cli)
- testalignerslength.sh (cli)
- testfilesystem.sh (cli)
- testformat.sh (cli)
- testformat2.sh (cli)
- tetramerfreq.sh (cli)
- textfile.sh (cli)
- tiledump.sh (cli)
- train.sh (cli)
- trainLCHist.sh (cli)
- translate6frames.sh (cli)
- trimcontigs.sh (cli)
- ttllsimulate.sh (cli)
- unicode2ascii.sh (cli)
- unzip.sh (cli)
- vcf2gff.sh (cli)
- visualizealignment.sh (cli)
- wavefrontaligner.sh (cli)
- wavefrontalignerviz.sh (cli)
- webcheck.sh (cli)
- wobblealigner.sh (cli)
- wobbleplusaligner.sh (cli)
- xdrophaligner.sh (cli)
- zz_rename_package.sh (cli)
- a_sample_mt.sh (别名)
- addadapters.sh (别名)
- addssu.sh (别名)
- adjusthomopolymers.sh (别名)
- alignrandom.sh (别名)
- alltoall.sh (别名)
- analyzeaccession.sh (别名)
- analyzegenes.sh (别名)
- analyzesketchresults.sh (别名)
- applyvariants.sh (别名)
- bamlinestreamer.sh (别名)
- bandedaligner.sh (别名)
- bandedplusaligner.sh (别名)
- bbcms.sh (别名)
- bbcountunique.sh (别名)
- bbcrisprfinder.sh (别名)
- bbduk.sh (别名)
- bbdukOld.sh (别名)
- bbdukS.sh (别名)
- bbest.sh (别名)
- bbfakereads.sh (别名)
- bbmap.sh (别名)
- bbmapskimmer.sh (别名)
- bbmask.sh (别名)
- bbmerge-auto.sh (别名)
- bbmerge.sh (别名)
- bbnorm.sh (别名)
- bbrealign.sh (别名)
- bbrename.sh (别名)
- bbsketch.sh (别名)
- bbsort.sh (别名)
- bbsplit.sh (别名)
- bbsplitpairs.sh (别名)
- bbstats.sh (别名)
- bbversion.sh (别名)
- bbwrap.sh (别名)
- bloomfilter.sh (别名)
- bloomfilterparser.sh (别名)
- calcmem.sh (别名)
- calctruequality.sh (别名)
- callgenes.sh (别名)
- callpeaks.sh (别名)
- callvariants.sh (别名)
- callvariants2.sh (别名)
- cat.sh (别名)
- cbcl2text.sh (别名)
- cg2illumina.sh (别名)
- checkstrand.sh (别名)
- cladeloader.sh (别名)
- cladeserver.sh (别名)
- cloudplot.sh (别名)
- clumpify.sh (别名)
- commonkmers.sh (别名)
- comparegff.sh (别名)
- comparelabels.sh (别名)
- comparesketch.sh (别名)
- comparessu.sh (别名)
- comparevcf.sh (别名)
- consect.sh (别名)
- consensus.sh (别名)
- copyfile.sh (别名)
- countbarcodes.sh (别名)
- countbarcodes2.sh (别名)
- countduplicates.sh (别名)
- countgc.sh (别名)
- countsharedlines.sh (别名)
- covmaker.sh (别名)
- crossblock.sh (别名)
- crosscontaminate.sh (别名)
- crosscutaligner.sh (别名)
- cutgff.sh (别名)
- cutprimers.sh (别名)
- ddlblacklist.sh (别名)
- ddlcalibrate.sh (别名)
- ddlcompare.sh (别名)
- ddlmerger.sh (别名)
- ddlwriter.sh (别名)
- decontaminate.sh (别名)
- dedupe.sh (别名)
- dedupe2.sh (别名)
- dedupebymapping.sh (别名)
- demuxbyname.sh (别名)
- demuxserver.sh (别名)
- diskbench.sh (别名)
- dlctieraccuracy.sh (别名)
- driftingaligner.sh (别名)
- driftingplusaligner.sh (别名)
- estherfilter.sh (别名)
- explodetree.sh (别名)
- fastqscan.sh (别名)
- fetchproks.sh (别名)
- filescan.sh (别名)
- filterassemblysummary.sh (别名)
- filterbarcodes.sh (别名)
- filterbycoverage.sh (别名)
- filterbyname.sh (别名)
- filterbysequence.sh (别名)
- filterbytaxa.sh (别名)
- filterbytile.sh (别名)
- filterlines.sh (别名)
- filtersam.sh (别名)
- filtersilva.sh (别名)
- filtersubs.sh (别名)
- filtervcf.sh (别名)
- findrepeats.sh (别名)
- findssu.sh (别名)
- fix_script_paths.sh (别名)
- fixgaps.sh (别名)
- fll2simulate.sh (别名)
- fungalrelease.sh (别名)
- fuse.sh (别名)
- gbff2gff.sh (别名)
- getreads.sh (别名)
- gi2ancestors.sh (别名)
- gi2taxid.sh (别名)
- gitable.sh (别名)
- glocalaligner.sh (别名)
- gradebins.sh (别名)
- grademerge.sh (别名)
- gradesam.sh (别名)
- icecreamfinder.sh (别名)
- icecreamgrader.sh (别名)
- icecreammaker.sh (别名)
- idmatrix.sh (别名)
- idtree.sh (别名)
- indelfree.sh (别名)
- invertkey.sh (别名)
- javasetup.sh (别名)
- kapastats.sh (别名)
- kcompress.sh (别名)
- keepbestcopy.sh (别名)
- khist.sh (别名)
- kmercountexact.sh (别名)
- kmercountmulti.sh (别名)
- kmercountshort.sh (别名)
- kmercoverage.sh (别名)
- kmerfilterset.sh (别名)
- kmerlimit.sh (别名)
- kmerlimit2.sh (别名)
- kmerposition.sh (别名)
- kmutate.sh (别名)
- lilypad.sh (别名)
- loadreads.sh (别名)
- loglog.sh (别名)
- lowcomplexcalibrate.sh (别名)
- makechimeras.sh (别名)
- makecontaminatedgenomes.sh (别名)
- makepolymers.sh (别名)
- makequickbinvector.sh (别名)
- mantissacompare.sh (别名)
- mapPacBio.sh (别名)
- matrixtocolumns.sh (别名)
- memdetect.sh (别名)
- mergeOTUs.sh (别名)
- mergebarcodes.sh (别名)
- mergepgm.sh (别名)
- mergeribo.sh (别名)
- mergesam.sh (别名)
- mergesketch.sh (别名)
- mergesorted.sh (别名)
- microalign.sh (别名)
- msa.sh (别名)
- mutate.sh (别名)
- muxbyname.sh (别名)
- netfilter.sh (别名)
- novademux.sh (别名)
- parallelogram.sh (别名)
- partition.sh (别名)
- phylip2fasta.sh (别名)
- picksubset.sh (别名)
- pileup.sh (别名)
- pileup2.sh (别名)
- plotflowcell.sh (别名)
- plotgc.sh (别名)
- plothist.sh (别名)
- plotreadposition.sh (别名)
- polyfilter.sh (别名)
- postfilter.sh (别名)
- printtime.sh (别名)
- processfrag.sh (别名)
- processhi-c.sh (别名)
- processspeed.sh (别名)
- profile.sh (别名)
- quabblealigner.sh (别名)
- quantumaligner.sh (别名)
- quickbin.sh (别名)
- quickclade.sh (别名)
- randomgenome.sh (别名)
- randomreads.sh (别名)
- randomreadsmg.sh (别名)
- readlength.sh (别名)
- reassemble.sh (别名)
- reducecolumns.sh (别名)
- reducesilva.sh (别名)
- reformat.sh (别名)
- reformat2.sh (别名)
- reformat3.sh (别名)
- reformatpb.sh (别名)
- removebadbarcodes.sh (别名)
- removecatdogmousehuman.sh (别名)
- removehuman.sh (别名)
- removehuman2.sh (别名)
- removemicrobes.sh (别名)
- removesmartbell.sh (别名)
- rename.sh (别名)
- renamebymapping.sh (别名)
- renamebysketch.sh (别名)
- renameimg.sh (别名)
- renameref.sh (别名)
- repair.sh (别名)
- replaceheaders.sh (别名)
- representative.sh (别名)
- rqcfilter.sh (别名)
- rqcfilter2.sh (别名)
- rqcfilter3.sh (别名)
- runhmm.sh (别名)
- samstreamer.sh (别名)
- samtoroc.sh (别名)
- scalarintervals.sh (别名)
- scalars.sh (别名)
- scoresequence.sh (别名)
- scrabblealigner.sh (别名)
- seal.sh (别名)
- sendclade.sh (别名)
- sendsketch.sh (别名)
- seqtovec.sh (别名)
- shred.sh (别名)
- shrinkaccession.sh (别名)
- shuffle.sh (别名)
- shuffle2.sh (别名)
- sketch.sh (别名)
- sketchblacklist.sh (别名)
- sketchblacklist2.sh (别名)
- smithwaterman.sh (别名)
- sortbyname.sh (别名)
- splitbytaxa.sh (别名)
- splitnextera.sh (别名)
- splitribo.sh (别名)
- splitsam.sh (别名)
- splitsam4way.sh (别名)
- splitsam6way.sh (别名)
- ssuserver.sh (别名)
- stats.sh (别名)
- stats3.sh (别名)
- statswrapper.sh (别名)
- stream.sh (别名)
- streamsam.sh (别名)
- subsketch.sh (别名)
- summarizecontam.sh (别名)
- summarizecoverage.sh (别名)
- summarizecrossblock.sh (别名)
- summarizemerge.sh (别名)
- summarizequast.sh (别名)
- summarizescafstats.sh (别名)
- summarizeseal.sh (别名)
- summarizesketch.sh (别名)
- synthmda.sh (别名)
- tadpipe.sh (别名)
- tadpole.sh (别名)
- tadwrapper.sh (别名)
- tagandmerge.sh (别名)
- taxonomy.sh (别名)
- taxserver.sh (别名)
- taxsize.sh (别名)
- taxtree.sh (别名)
- testaligners.sh (别名)
- testaligners2.sh (别名)
- testalignersbatch.sh (别名)
- testalignerslength.sh (别名)
- testfilesystem.sh (别名)
- testformat.sh (别名)
- testformat2.sh (别名)
- tetramerfreq.sh (别名)
- textfile.sh (别名)
- tiledump.sh (别名)
- train.sh (别名)
- trainLCHist.sh (别名)
- translate6frames.sh (别名)
- trimcontigs.sh (别名)
- ttllsimulate.sh (别名)
- unicode2ascii.sh (别名)
- unzip.sh (别名)
- vcf2gff.sh (别名)
- visualizealignment.sh (别名)
- wavefrontaligner.sh (别名)
- wavefrontalignerviz.sh (别名)
- webcheck.sh (别名)
- wobblealigner.sh (别名)
- wobbleplusaligner.sh (别名)
- xdrophaligner.sh (别名)
- zz_rename_package.sh (别名)

## 依赖

- openjdk

## 安装行为

- post-install 钩子: 未定义
- Bottle: 可用 于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux

## 版本和新鲜度

- 页面生成时间: 2026-07-08
- 管理器版本: 39.94
- 管理器更新时间: 2026-07-06
- 本地数据: OK
- 上游仓库: https://bbmap.org/
- 信息: Release/tag comparison is only available for GitHub repositories.
## 项目历史与用法

BBTools is Brian Bushnell's large Java-based suite for DNA and RNA sequencing data. The suite includes BBMap, BBDuk, BBMerge, BBNorm, Tadpole, Clumpify, CallVariants, sketching tools, and many other command-line utilities.

### 项目历史

The official site identifies BBMap and BBTools as the official suite created and maintained by Brian Bushnell. The GitHub README describes BBTools as fast, multithreaded bioinformatics tools for common sequencing formats including FASTQ, FASTA, SAM/BAM, GFF/GTF, VCF, and compressed files.

The package grew from core read-mapping and read-processing utilities into a broad toolbox. The official site lists hundreds of tools, while the README highlights core workflows such as adapter trimming, read mapping, error correction, assembly, compression optimization, variant calling, and MinHash-style sketch comparison.

The upstream README lists the current version as 39.93 and states that BBTools is used in production at JGI and cited in thousands of publications.

### 采用历史

BBTools' adoption is anchored in genomics labs and sequencing pipelines rather than general developer workflows. Its official download paths include GitHub, SourceForge, and Docker, while Homebrew packages it for macOS and Linux users who want the command suite installed alongside other scientific CLI tools.

### 使用方式

Common usage is pipeline-oriented: run scripts such as `bbduk.sh` for adapter trimming and quality filtering, `bbmap.sh` for short-read alignment, `bbmerge.sh` for paired-read merging, `tadpole.sh` for correction or small assembly, and `sendsketch.sh` for rapid organism identification.

Because it is Java-based and shell-script driven, BBTools is portable across Unix-like systems and easy to embed in HPC, workflow-manager, and lab automation environments.

### 为什么软件包爱好者会关心

BBTools matters to package nerds because it is a dense scientific tool suite distributed as many small executables from one upstream project. It is a good example of why package managers sometimes need to expose an entire research toolkit rather than one binary.

It also illustrates the packaging tension around bioinformatics software: users need reproducible versions, hundreds of entry points, Java runtime assumptions, documentation, and citation metadata, all for tools that may be critical to published scientific pipelines.

### 时间线

- 2014: README citation names `BBMap: A Fast, Accurate, Splice-Aware Aligner`.
- Current: Official README lists BBTools version 39.93.
- Current: Official website describes BBMap/BBTools as Brian Bushnell's maintained suite and links GitHub, SourceForge, and Docker distribution paths.

### Related projects

- Related projects include BWA, Bowtie2, SAMtools, FastQC, Trimmomatic, Cutadapt, SPAdes, Kraken-style taxonomic tools, and other sequencing QC, alignment, assembly, and classification packages.

### 来源

- <https://bbmap.org/>
- <https://bbmap.org/tools>
- <https://github.com/bbushnell/BBTools#readme>
- input:source_facts.executables


## 安全说明

没有找到 bbtools 的匹配本地密钥处理 manifest。Nucleus 软件包元数据仍在此发布，以便未来覆盖拥有稳定的软件包 URL。



## Configuration and credential file locations

These source-backed paths show where this package keeps local settings or durable credentials. Automic Vault can use them as review targets for secret scanning, migration, and command approval.


## Configuration files

- Unix: bbmap/config/
## 源数据库详情

- **Source Database:** Homebrew formula API
- **Tap:** homebrew/core
- **Full Name:** bbtools
- **Version Scheme:** 0
- **Revision:** 0
- **Bottle Stable Root URL:** <https://ghcr.io/v2/homebrew/core>
- **Deprecated:** no
- **Disabled:** no
- **Keg Only:** no
- **URL Keys:** stable


## 相关链接

- [Terminal utility packages](https://www.automicvault.com/zh-hans/pkg/terminal-utilities/) - Matched terminal and command-line workflow metadata.
- [Networking and protocol packages](https://www.automicvault.com/zh-hans/pkg/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata.
- [Scientific computing packages](https://www.automicvault.com/zh-hans/pkg/scientific-computing-tools/) - Matched scientific computing metadata.
- [Homebrew utility packages](https://www.automicvault.com/zh-hans/pkg/brew-utility-packages/) - Matched Homebrew package provider.
- [openjdk](https://www.automicvault.com/zh-hans/pkg/brew/openjdk/) - Runtime dependency declared by Homebrew.
- [bowtie2](https://www.automicvault.com/zh-hans/pkg/brew/bowtie2/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science, sequencing.
- [breseq](https://www.automicvault.com/zh-hans/pkg/brew/breseq/) - Shares av.db curated category or tags: bioinformatics, cli, dna, genomics, science.
- [fgbio](https://www.automicvault.com/zh-hans/pkg/brew/fgbio/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science, sequencing.
- [htslib](https://www.automicvault.com/zh-hans/pkg/brew/htslib/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science, sequencing.
- [jellyfish](https://www.automicvault.com/zh-hans/pkg/brew/jellyfish/) - Shares av.db curated category or tags: bioinformatics, cli, dna, genomics, science.
- [kalign](https://www.automicvault.com/zh-hans/pkg/brew/kalign/) - Shares av.db curated category or tags: bioinformatics, cli, dna, rna, science.
- [lastz](https://www.automicvault.com/zh-hans/pkg/brew/lastz/) - Shares av.db curated category or tags: bioinformatics, cli, dna, genomics, science.
- [minimap2](https://www.automicvault.com/zh-hans/pkg/brew/minimap2/) - Shares av.db curated category or tags: bioinformatics, cli, dna, genomics, science.
- [picard-tools](https://www.automicvault.com/zh-hans/pkg/brew/picard-tools/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, genomics, manipulating, openjdk.
- [samtools](https://www.automicvault.com/zh-hans/pkg/brew/samtools/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, genomics, manipulating, science.

## Combined YAML source

View the package source record on GitHub. [combined/bbtools.yml](https://github.com/automic-vault/db/blob/main/combined/bbtools.yml)


## 来源

- Nucleus package database
- Geiger risk classifier
- package-page enrichment
- curated configuration and credential file locations
- curated package history
- package version freshness
- av.db category and tag curation
- package relationship graph
- cross-ecosystem install command graph