# 使用 Homebrew 安装 autocycler 查看 autocycler 的安装路径、可执行文件、元数据以及面向 AI 代理工作流的安全说明。 ## 安装 ```sh sudo av install brew:autocycler ``` 其他安装命令: ### macOS - Homebrew (100%): ```sh brew install autocycler ``` 证据: local Homebrew formula metadata ## 软件包事实 - **软件包键:** brew:autocycler - **软件包管理器:** Homebrew - **软件包管理器页面:** - **版本:** 0.6.2 - **来源摘要:** Tool for generating consensus long-read assemblies for bacterial genomes - **主页:** - **仓库:** - **上游文档:** - **许可证:** GPL-3.0-or-later - **源码归档:** - **最后更新:** 2026-04-14T10:27:47Z - **已生成:** 2026-07-08T07:18:31+00:00 ## 可执行文件 - autocycler (cli) - autocycler (别名) ## 构建依赖 - rust ## 安装行为 - post-install 钩子: 未定义 - Bottle: 可用 于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux ## 版本和新鲜度 - 页面生成时间: 2026-07-08 - 管理器版本: 0.6.2 - 管理器更新时间: 2026-04-14 - 本地数据: OK - 上游仓库: https://github.com/rrwick/Autocycler - 检测到的最新版本: v0.6.2 (当前) ## 项目历史与用法 Autocycler is a Rust command-line tool for generating consensus long-read bacterial genome assemblies from multiple alternative assemblies. ### 项目历史 The GitHub repository was created on 2023-11-10 and the first public GitHub release, v0.1.0, was published on 2024-11-11. The README describes Autocycler as the successor to Trycycler and says most users should prefer Autocycler over Trycycler. In 2025, Wick, Howden and Stinear published the Autocycler paper in Bioinformatics, giving the project a formal citation path for research use. By 2026 the project had reached v0.6.2, published on 2026-04-14. ### 采用历史 Autocycler's adoption path is academic and bioinformatics-oriented: the README asks research users to cite the Bioinformatics paper, the wiki provides workflows for automated and manually curated assemblies, and the installation docs mention Bioconda in addition to pre-built binaries. Its scope is intentionally narrower than general genome assembly: the wiki says it aims to produce complete bacterial genome assemblies and requires input assemblies that are mostly or ideally all complete. ### 使用方式 The wiki describes a multi-step workflow: subsample reads, generate several input assemblies with supported long-read assemblers, compress assemblies into a unitig graph, cluster contigs, trim and resolve clusters, then combine resolved clusters into consensus_assembly.fasta. For minimal setup, the very quick start points users at a conda environment and an automated Bash pipeline that runs the full process with reads.fastq.gz, thread count and parallel job count. ### 为什么软件包爱好者会关心 Autocycler is notable for packaging a modern Rust bioinformatics executable whose usefulness depends on a surrounding toolchain of long-read assemblers. The binary itself is standalone, but real-world workflows often rely on conda environments, Dockerfiles or pipeline scripts to assemble the full stack. For package databases, it is a good example of a domain-specific CLI where the Homebrew formula exposes only one executable while the official docs point to Bioconda and custom environments for complete scientific workflows. ### 时间线 - 2023: GitHub repository created on 2023-11-10. - 2024: v0.1.0 released on 2024-11-11. - 2025: Autocycler paper published in Bioinformatics. - 2026: v0.6.2 released on 2026-04-14. ### Related projects - The README identifies Trycycler as Autocycler's predecessor. - The wiki's automated workflow references long-read assemblers including canu, flye, metamdbg, miniasm, necat, nextdenovo, plassembler and raven. ### 来源 - - - - - ## 安全说明 narrow executable package without higher-risk signals. - **Geiger 风险:** 绿色 / 低 - narrow executable package without higher-risk signals ## 源数据库详情 - **Source Database:** Homebrew formula API - **Tap:** homebrew/core - **Full Name:** autocycler - **Version Scheme:** 0 - **Revision:** 0 - **Head Version:** HEAD - **Bottle Stable Root URL:** - **Deprecated:** no - **Disabled:** no - **Keg Only:** no - **URL Keys:** head, stable ## 相关链接 - [Source-control packages](https://www.automicvault.com/zh-hans/pkg/source-control-tools/) - Belongs to a source-control command family. - [Terminal utility packages](https://www.automicvault.com/zh-hans/pkg/terminal-utilities/) - Matched terminal and command-line workflow metadata. - [Networking and protocol packages](https://www.automicvault.com/zh-hans/pkg/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata. - [Scientific computing packages](https://www.automicvault.com/zh-hans/pkg/scientific-computing-tools/) - Matched scientific computing metadata. - [rust](https://www.automicvault.com/zh-hans/pkg/brew/rust/) - Build dependency declared by Homebrew. - [bedtools](https://www.automicvault.com/zh-hans/pkg/brew/bedtools/) - Shares av.db curated category or tags: bioinformatics, cli, genome, science. - [abpoa](https://www.automicvault.com/zh-hans/pkg/brew/abpoa/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [abricate](https://www.automicvault.com/zh-hans/pkg/brew/abricate/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [abyss](https://www.automicvault.com/zh-hans/pkg/brew/abyss/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [adapterremoval](https://www.automicvault.com/zh-hans/pkg/brew/adapterremoval/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [alevin-fry](https://www.automicvault.com/zh-hans/pkg/brew/alevin-fry/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [any2fasta](https://www.automicvault.com/zh-hans/pkg/brew/any2fasta/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [augustus](https://www.automicvault.com/zh-hans/pkg/brew/augustus/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [polypolish](https://www.automicvault.com/zh-hans/pkg/brew/polypolish/) - Local package facts share a topical domain. Shared terms: assemblies, assembly, bioinformatics, cli, genome. - [flye](https://www.automicvault.com/zh-hans/pkg/brew/flye/) - Local package facts share a topical domain. Shared terms: assembly, bioinformatics, cli, genome, long. - [badread](https://www.automicvault.com/zh-hans/pkg/brew/badread/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, long, read, science. ## Combined YAML source View the package source record on GitHub. [combined/autocycler.yml](https://github.com/automic-vault/db/blob/main/combined/autocycler.yml) ## 来源 - Nucleus package database - Geiger risk classifier - package-page enrichment - curated package history - package version freshness - av.db category and tag curation - package relationship graph - cross-ecosystem install command graph