# Scientific computing packages

Math, statistics, biology, chemistry, geospatial, and scientific computing packages.

- **Packages:** 385
- **Protected tools:** 0
- **Approval gates:** 0
- **Non-low risk:** 52
- **Updated:** 2026-07-10

## Why this package group is here

Scientific computing packages currently includes 385 package catalog entries. 0 have protected-tool coverage, 0 have approval-gate metadata, and 52 have non-low Geiger classifier findings. The grouping comes from package metadata, so it can stay current as that metadata changes.

## Generated source

This hub uses the same local package data as individual package pages: Nucleus package metadata, Homebrew enrichment, Geiger classifier output, secret-handling manifests, and approval-gate seeds where available.

## Review model

Use the hub to find command families that need tighter secret injection, approval gates, or manual review before agents run them.

## Indexed package pages

- [acl2](https://www.automicvault.com/pkg/brew/acl2/) - generalized runtime or code generation signal
- [chapel](https://www.automicvault.com/pkg/brew/chapel/) - broad file, network, media, or database tool signal
- [flexiblas](https://www.automicvault.com/pkg/brew/flexiblas/) - generalized runtime or code generation signal
- [julia](https://www.automicvault.com/pkg/brew/julia/) - generalized runtime or code generation signal
- [numbat](https://www.automicvault.com/pkg/brew/numbat/) - generalized runtime or code generation signal
- [openfst](https://www.automicvault.com/pkg/brew/openfst/) - broad file, network, media, or database tool signal
- [ott](https://www.automicvault.com/pkg/brew/ott/) - generalized runtime or code generation signal
- [aamath](https://www.automicvault.com/pkg/brew/aamath/) - narrow executable package without higher-risk signals
- [abpoa](https://www.automicvault.com/pkg/brew/abpoa/) - library-like package without higher-risk signals
- [abricate](https://www.automicvault.com/pkg/brew/abricate/) - narrow executable package without higher-risk signals
- [abyss](https://www.automicvault.com/pkg/brew/abyss/) - narrow executable package without higher-risk signals
- [adapterremoval](https://www.automicvault.com/pkg/brew/adapterremoval/) - no executable entrypoint in the package index
- [admesh](https://www.automicvault.com/pkg/brew/admesh/) - narrow executable package without higher-risk signals
- [alevin-fry](https://www.automicvault.com/pkg/brew/alevin-fry/) - no executable entrypoint in the package index
- [any2fasta](https://www.automicvault.com/pkg/brew/any2fasta/) - narrow executable package without higher-risk signals
- [apache-arrow](https://www.automicvault.com/pkg/brew/apache-arrow/) - narrow executable package without higher-risk signals
- [apache-opennlp](https://www.automicvault.com/pkg/brew/apache-opennlp/) - narrow executable package without higher-risk signals
- [arxiv_latex_cleaner](https://www.automicvault.com/pkg/brew/arxiv-latex-cleaner/) - narrow executable package without higher-risk signals
- [asciitex](https://www.automicvault.com/pkg/brew/asciitex/) - narrow executable package without higher-risk signals
- [astroterm](https://www.automicvault.com/pkg/brew/astroterm/) - narrow executable package without higher-risk signals
- [augustus](https://www.automicvault.com/pkg/brew/augustus/) - narrow executable package without higher-risk signals
- [autocycler](https://www.automicvault.com/pkg/brew/autocycler/) - narrow executable package without higher-risk signals
- [aws-lc](https://www.automicvault.com/pkg/brew/aws-lc/) - no executable entrypoint in the package index
- [badread](https://www.automicvault.com/pkg/brew/badread/) - narrow executable package without higher-risk signals
- [bamtools](https://www.automicvault.com/pkg/brew/bamtools/) - narrow executable package without higher-risk signals
- [bbtools](https://www.automicvault.com/pkg/brew/bbtools/) - no executable entrypoint in the package index
- [bcftools](https://www.automicvault.com/pkg/brew/bcftools/) - narrow executable package without higher-risk signals
- [beast](https://www.automicvault.com/pkg/brew/beast/) - no executable entrypoint in the package index
- [bedtk](https://www.automicvault.com/pkg/brew/bedtk/) - narrow executable package without higher-risk signals
- [bibclean](https://www.automicvault.com/pkg/brew/bibclean/) - narrow executable package without higher-risk signals
- [bioawk](https://www.automicvault.com/pkg/brew/bioawk/) - narrow executable package without higher-risk signals
- [biodiff](https://www.automicvault.com/pkg/brew/biodiff/) - narrow executable package without higher-risk signals
- [bioperl](https://www.automicvault.com/pkg/brew/bioperl/) - narrow executable package without higher-risk signals
- [biosig](https://www.automicvault.com/pkg/brew/biosig/) - narrow executable package without higher-risk signals
- [blahtexml](https://www.automicvault.com/pkg/brew/blahtexml/) - narrow executable package without higher-risk signals
- [blitzwave](https://www.automicvault.com/pkg/brew/blitzwave/) - library-like package without higher-risk signals
- [bowtie2](https://www.automicvault.com/pkg/brew/bowtie2/) - narrow executable package without higher-risk signals
- [breseq](https://www.automicvault.com/pkg/brew/breseq/) - narrow executable package without higher-risk signals
- [btllib](https://www.automicvault.com/pkg/brew/btllib/) - library-like package without higher-risk signals
- [bwa](https://www.automicvault.com/pkg/brew/bwa/) - narrow executable package without higher-risk signals
- [cadical](https://www.automicvault.com/pkg/brew/cadical/) - narrow executable package without higher-risk signals
- [calc](https://www.automicvault.com/pkg/brew/calc/) - no executable entrypoint in the package index
- [calceph](https://www.automicvault.com/pkg/brew/calceph/) - library-like package without higher-risk signals
- [cbc](https://www.automicvault.com/pkg/brew/cbc/) - narrow executable package without higher-risk signals
- [ccfits](https://www.automicvault.com/pkg/brew/ccfits/) - library-like package without higher-risk signals
- [cddlib](https://www.automicvault.com/pkg/brew/cddlib/) - narrow executable package without higher-risk signals
- [cdi](https://www.automicvault.com/pkg/brew/cdi/) - narrow executable package without higher-risk signals
- [cfitsio](https://www.automicvault.com/pkg/brew/cfitsio/) - narrow executable package without higher-risk signals
- [chadwick](https://www.automicvault.com/pkg/brew/chadwick/) - narrow executable package without higher-risk signals
- [clblas](https://www.automicvault.com/pkg/brew/clblas/) - library-like package without higher-risk signals
- [clblast](https://www.automicvault.com/pkg/brew/clblast/) - library-like package without higher-risk signals
- [clhep](https://www.automicvault.com/pkg/brew/clhep/) - library-like package without higher-risk signals
- [cloc](https://www.automicvault.com/pkg/brew/cloc/) - narrow executable package without higher-risk signals
- [clp](https://www.automicvault.com/pkg/brew/clp/) - narrow executable package without higher-risk signals
- [cmatrix](https://www.automicvault.com/pkg/brew/cmatrix/) - narrow executable package without higher-risk signals
- [colmap](https://www.automicvault.com/pkg/brew/colmap/) - no executable entrypoint in the package index
- [corsixth](https://www.automicvault.com/pkg/brew/corsixth/) - narrow executable package without higher-risk signals
- [cp2k](https://www.automicvault.com/pkg/brew/cp2k/) - narrow executable package without higher-risk signals
- [cromwell](https://www.automicvault.com/pkg/brew/cromwell/) - narrow executable package without higher-risk signals
- [cryptominisat](https://www.automicvault.com/pkg/brew/cryptominisat/) - narrow executable package without higher-risk signals
- [cspice](https://www.automicvault.com/pkg/brew/cspice/) - narrow executable package without higher-risk signals
- [cutadapt](https://www.automicvault.com/pkg/brew/cutadapt/) - narrow executable package without higher-risk signals
- [damask-grid](https://www.automicvault.com/pkg/brew/damask-grid/) - narrow executable package without higher-risk signals
- [datalad](https://www.automicvault.com/pkg/brew/datalad/) - no executable entrypoint in the package index
- [datamash](https://www.automicvault.com/pkg/brew/datamash/) - narrow executable package without higher-risk signals
- [dcm2niix](https://www.automicvault.com/pkg/brew/dcm2niix/) - no executable entrypoint in the package index
- [dcmtk](https://www.automicvault.com/pkg/brew/dcmtk/) - narrow executable package without higher-risk signals
- [depqbf](https://www.automicvault.com/pkg/brew/depqbf/) - narrow executable package without higher-risk signals
- [diamond](https://www.automicvault.com/pkg/brew/diamond/) - no executable entrypoint in the package index
- [diffstat](https://www.automicvault.com/pkg/brew/diffstat/) - narrow executable package without higher-risk signals
- [dmtx-utils](https://www.automicvault.com/pkg/brew/dmtx-utils/) - narrow executable package without higher-risk signals
- [dopewars](https://www.automicvault.com/pkg/brew/dopewars/) - narrow executable package without higher-risk signals