# Install perbase with Homebrew

Fast and correct perbase BAM/CRAM analysis. Version 1.4.0 via Homebrew; verified 2026-06-22.

## Install

```sh
sudo av install brew:perbase
```

Additional install commands:

### macOS

- Homebrew (100%):

```sh
brew install perbase
```

  Evidence: local Homebrew formula metadata

## Package facts

- **Package key:** brew:perbase
- **Package manager:** Homebrew
- **Package manager page:** <https://formulae.brew.sh/formula/perbase>
- **Version:** 1.4.0
- **Source summary:** Fast and correct perbase BAM/CRAM analysis
- **Homepage:** <https://github.com/sstadick/perbase>
- **Repository:** <https://github.com/sstadick/perbase>
- **Upstream docs:** <https://github.com/sstadick/perbase#readme>
- **License:** MIT
- **Source archive:** <https://github.com/sstadick/perbase/archive/refs/tags/v1.4.0.tar.gz>
- **Last updated:** 2026-06-22T14:05:50-07:00
- **Generated:** 2026-07-08T07:18:31+00:00

## Executables

- perbase (cli)
- perbase (alias)

## Build dependencies

- cmake
- pkgconf
- rust

## Uses from macOS

- bzip2
- curl
- llvm

## Install behavior

- Post-install hook: not defined
- Bottle: available on arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux

## Freshness

- Page generated: 2026-07-08
- Package-manager version: 1.4.0
- Package-manager updated: 2026-06-22
- Local data: ok
- Upstream repository: https://github.com/sstadick/perbase
- Upstream latest detected: v1.4.0 (current)

## Security Notes

narrow executable package without higher-risk signals.

- **Geiger risk:** green / low
- narrow executable package without higher-risk signals

## Source Database Details

- **Source Database:** Homebrew formula API
- **Tap:** homebrew/core
- **Full Name:** perbase
- **Version Scheme:** 0
- **Revision:** 0
- **Head Version:** HEAD
- **Bottle Stable Root URL:** <https://ghcr.io/v2/homebrew/core>
- **Deprecated:** no
- **Disabled:** no
- **Keg Only:** no
- **URL Keys:** head, stable


## Related links

- [Source-control packages](https://www.automicvault.com/pkg/source-control-tools/) - Belongs to a source-control command family.
- [Terminal utility packages](https://www.automicvault.com/pkg/terminal-utilities/) - Matched terminal and command-line workflow metadata.
- [Networking and protocol packages](https://www.automicvault.com/pkg/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata.
- [Scientific computing packages](https://www.automicvault.com/pkg/scientific-computing-tools/) - Matched scientific computing metadata.
- [cmake](https://www.automicvault.com/pkg/brew/cmake/) - Build dependency declared by Homebrew.
- [pkgconf](https://www.automicvault.com/pkg/brew/pkgconf/) - Build dependency declared by Homebrew.
- [rust](https://www.automicvault.com/pkg/brew/rust/) - Build dependency declared by Homebrew.
- [samtools](https://www.automicvault.com/pkg/brew/samtools/) - Shares av.db curated category or tags: bam, bioinformatics, cli, cram, genomics.
- [sambamba](https://www.automicvault.com/pkg/brew/sambamba/) - Shares av.db curated category or tags: bam, bioinformatics, cli, genomics, science.
- [abricate](https://www.automicvault.com/pkg/brew/abricate/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [bbtools](https://www.automicvault.com/pkg/brew/bbtools/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [bioperl](https://www.automicvault.com/pkg/brew/bioperl/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [blast](https://www.automicvault.com/pkg/brew/blast/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [bowtie2](https://www.automicvault.com/pkg/brew/bowtie2/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [breseq](https://www.automicvault.com/pkg/brew/breseq/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [jellyfish](https://www.automicvault.com/pkg/brew/jellyfish/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, fast, genomics, science.
- [skani](https://www.automicvault.com/pkg/brew/skani/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, fast, genomics, science.

## Combined YAML source

View the package source record on GitHub. [combined/perbase.yml](https://github.com/automic-vault/db/blob/main/combined/perbase.yml)


## Sources

- Nucleus package database
- Geiger risk classifier
- package-page enrichment
- package version freshness
- av.db category and tag curation
- package relationship graph
- cross-ecosystem install command graph