# proteinortho を Homebrew, apt でインストール

proteinortho のインストール経路、実行ファイル、メタデータ、AI エージェント向けセキュリティノートを確認します。

## インストール

```sh
sudo av install brew:proteinortho
```

追加のインストールコマンド:

### macOS

- Homebrew (100%):

```sh
brew install proteinortho
```

  証拠: local Homebrew formula metadata

### Linux

- Debian apt (92%):

```sh
sudo apt install proteinortho
```

  証拠: Debian stable package indexes: proteinortho from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz

## パッケージ情報

- **パッケージキー:** brew:proteinortho
- **パッケージマネージャ:** Homebrew
- **パッケージマネージャページ:** <https://formulae.brew.sh/formula/proteinortho>
- **バージョン:** 6.3.6
- **ソース概要:** Detecting orthologous genes within different species
- **ホームページ:** <https://gitlab.com/paulklemm_PHD/proteinortho>
- **リポジトリ:** <https://gitlab.com/paulklemm_PHD/proteinortho>
- **上流ドキュメント:** <https://gitlab.com/paulklemm_PHD/proteinortho#readme>
- **ライセンス:** GPL-3.0-or-later
- **ソースアーカイブ:** <https://gitlab.com/paulklemm_PHD/proteinortho/-/archive/v6.3.6/proteinortho-v6.3.6.tar.gz>
- **最終更新:** 2026-06-25T13:38:03+02:00
- **生成日時:** 2026-07-08T18:08:21+00:00

## 実行可能ファイル

- proteinortho (cli)
- proteinortho2html.pl (cli)
- proteinortho2tree.pl (cli)
- proteinortho2xml.pl (cli)
- proteinortho6.pl (cli)
- proteinortho_cleanupblastgraph (cli)
- proteinortho_clustering (cli)
- proteinortho_compareProteinorthoGraphs.pl (cli)
- proteinortho_do_mcl.pl (cli)
- proteinortho_extract_from_graph.pl (cli)
- proteinortho_ffadj_mcs.py (cli)
- proteinortho_formatUsearch.pl (cli)
- proteinortho_grab_proteins.pl (cli)
- proteinortho_graphMinusRemovegraph (cli)
- proteinortho_history.pl (cli)
- proteinortho_singletons.pl (cli)
- proteinortho_summary.pl (cli)
- proteinortho (エイリアス)
- proteinortho2html.pl (エイリアス)
- proteinortho2tree.pl (エイリアス)
- proteinortho2xml.pl (エイリアス)
- proteinortho6.pl (エイリアス)
- proteinortho_cleanupblastgraph (エイリアス)
- proteinortho_clustering (エイリアス)
- proteinortho_compareProteinorthoGraphs.pl (エイリアス)
- proteinortho_do_mcl.pl (エイリアス)
- proteinortho_extract_from_graph.pl (エイリアス)
- proteinortho_ffadj_mcs.py (エイリアス)
- proteinortho_formatUsearch.pl (エイリアス)
- proteinortho_grab_proteins.pl (エイリアス)
- proteinortho_graphMinusRemovegraph (エイリアス)
- proteinortho_history.pl (エイリアス)
- proteinortho_singletons.pl (エイリアス)
- proteinortho_summary.pl (エイリアス)

## 依存関係

- diamond
- libomp
- openblas

## インストール挙動

- post-install フック: 未定義
- Bottle: 利用可能 対象 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, arm64_ventura, sonoma, ventura, x86_64_linux

## バージョンと鮮度

- ページ生成日: 2026-07-08
- マネージャ版: 6.3.6
- マネージャ更新日: 2026-06-25
- ローカルデータ: OK
- 上流リポジトリ: https://gitlab.com/paulklemm_PHD/proteinortho
- 情報: Release/tag comparison is only available for GitHub repositories.

## セキュリティノート

infrastructure mutation or orchestration signal.

- **Geiger リスク:** orange / 中
- infrastructure mutation or orchestration signal

## ソースデータベース詳細

- **Source Database:** Homebrew formula API
- **Tap:** homebrew/core
- **Full Name:** proteinortho
- **Version Scheme:** 0
- **Revision:** 0
- **Bottle Stable Root URL:** <https://ghcr.io/v2/homebrew/core>
- **Deprecated:** no
- **Disabled:** no
- **Keg Only:** no
- **URL Keys:** stable

## 他のパッケージマネージャ記録

- Debian apt - proteinortho - 6.3.1+dfsg-1: normalized package name match | Debian stable package indexes: proteinortho from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Detection of (Co-)orthologs in large-scale protein analysis | https://gitlab.com/paulklemm_PHD/proteinortho
- Ubuntu apt - proteinortho - 6.3.1+dfsg-1: normalized package name match | Ubuntu 24.04 LTS package indexes: proteinortho from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | Detection of (Co-)orthologs in large-scale protein analysis | https://gitlab.com/paulklemm_PHD/proteinortho


## 関連リンク

- [Secret-risk packages](https://www.automicvault.com/ja/pkg/secret-risk-packages/) - Has protected-tool coverage, approval-gate, or non-low Geiger security signals.
- [Terminal utility packages](https://www.automicvault.com/ja/pkg/terminal-utilities/) - Matched terminal and command-line workflow metadata.
- [Networking and protocol packages](https://www.automicvault.com/ja/pkg/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata.
- [Scientific computing packages](https://www.automicvault.com/ja/pkg/scientific-computing-tools/) - Matched scientific computing metadata.
- [diamond](https://www.automicvault.com/ja/pkg/brew/diamond/) - Runtime dependency declared by Homebrew.
- [abricate](https://www.automicvault.com/ja/pkg/brew/abricate/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [bbtools](https://www.automicvault.com/ja/pkg/brew/bbtools/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [bioperl](https://www.automicvault.com/ja/pkg/brew/bioperl/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [blast](https://www.automicvault.com/ja/pkg/brew/blast/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [bowtie2](https://www.automicvault.com/ja/pkg/brew/bowtie2/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [breseq](https://www.automicvault.com/ja/pkg/brew/breseq/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [echtvar](https://www.automicvault.com/ja/pkg/brew/echtvar/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [fastga](https://www.automicvault.com/ja/pkg/brew/fastga/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science.
- [mafft](https://www.automicvault.com/ja/pkg/brew/mafft/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, science, sequence.
- [kalign](https://www.automicvault.com/ja/pkg/brew/kalign/) - Local package facts share a topical domain. Shared terms: analysis, bioinformatics, cli, libomp, science.
- [mmseqs2](https://www.automicvault.com/ja/pkg/brew/mmseqs2/) - Local package facts share a topical domain. Shared terms: analysis, bioinformatics, cli, clustering, libomp.

## Combined YAML source

View the package source record on GitHub. [combined/proteinortho.yml](https://github.com/automic-vault/db/blob/main/combined/proteinortho.yml)


## ソース

- Nucleus package database
- Geiger risk classifier
- package-page enrichment
- package version freshness
- av.db category and tag curation
- package relationship graph
- external package-manager database matches
- cross-ecosystem install command graph