# fastq-tools を Homebrew でインストール

fastq-tools のインストール経路、実行ファイル、メタデータ、AI エージェント向けセキュリティノートを確認します。

## インストール

```sh
sudo av install brew:fastq-tools
```

追加のインストールコマンド:

### macOS

- Homebrew (100%):

```sh
brew install fastq-tools
```

  証拠: local Homebrew formula metadata

## パッケージ情報

- **パッケージキー:** brew:fastq-tools
- **パッケージマネージャ:** Homebrew
- **パッケージマネージャページ:** <https://formulae.brew.sh/formula/fastq-tools>
- **バージョン:** 0.8.3
- **ソース概要:** Small utilities for working with fastq sequence files
- **ホームページ:** <https://github.com/dcjones/fastq-tools>
- **リポジトリ:** <https://github.com/dcjones/fastq-tools>
- **上流ドキュメント:** <https://github.com/dcjones/fastq-tools#readme>
- **ライセンス:** MIT
- **ソースアーカイブ:** <https://github.com/dcjones/fastq-tools/archive/refs/tags/v0.8.3.tar.gz>
- **生成日時:** 2026-07-08T07:18:31+00:00

## 実行可能ファイル

- fastq-grep (cli)
- fastq-kmers (cli)
- fastq-match (cli)
- fastq-qscale (cli)
- fastq-qual (cli)
- fastq-qualadj (cli)
- fastq-sample (cli)
- fastq-sort (cli)
- fastq-uniq (cli)
- fastq-grep (エイリアス)
- fastq-kmers (エイリアス)
- fastq-match (エイリアス)
- fastq-qscale (エイリアス)
- fastq-qual (エイリアス)
- fastq-qualadj (エイリアス)
- fastq-sample (エイリアス)
- fastq-sort (エイリアス)
- fastq-uniq (エイリアス)

## 依存関係

- pcre

## ビルド依存関係

- autoconf
- automake
- libtool

## インストール挙動

- post-install フック: 未定義
- Bottle: 利用可能 対象 arm64_big_sur, arm64_linux, arm64_monterey, arm64_sequoia, arm64_sonoma, arm64_tahoe, arm64_ventura, big_sur, catalina, monterey, sonoma, ventura

## バージョンと鮮度

- ページ生成日: 2026-07-08
- マネージャ版: 0.8.3
- ローカルデータ: OK
- 上流リポジトリ: https://github.com/dcjones/fastq-tools
- 検出された最新: v0.8.3 (最新)
- 情報: No package-manager update timestamp was available.
## プロジェクトの歴史と使われ方

fastq-tools is a compact suite of Unix-style utilities for FASTQ sequencing files, including tools for sorting, grepping, k-mer counting, local sequence matching, quality-score tabulation and adjustment, sampling, and duplicate counting.

### プロジェクトの歴史

Daniel C. Jones published fastq-tools under an MIT-style license in 2011. The README presents it as a collection of small and efficient programs for common tasks with high-throughput sequencing data in FASTQ format.

The package follows the older autotools-era scientific CLI model: generated configure scripts for release tarballs, autogen.sh for git checkouts, and a short dependency list of PCRE and zlib. The GitHub repository remained active through later tags, with v0.8.3 listed among its published tags.

### 採用の歴史

fastq-tools is niche compared with later all-in-one preprocessors, but it fills a durable command-line niche for people who want small composable tools over a single workflow application. Its Homebrew packaging reflects that Unix-toolbox use case.

### 使われ方

The suite works with ordinary and gzipped FASTQ files. Users pick individual commands such as fastq-sort, fastq-grep, fastq-kmers, fastq-sample, fastq-uniq, and fastq-qual rather than configuring a long-running application.

No persistent configuration or credentials file is documented; behavior is driven by command-line options and the input FASTQ streams or files.

### パッケージ好きにとっての重要性

fastq-tools is significant as a small-binary, many-command package: it packages the FASTQ format as a shell-friendly toolkit. That makes it closer to classic text-processing utilities than to GUI or report-heavy bioinformatics applications.

### タイムライン

- 2011: The GitHub repository is created and the README copyright names Daniel C. Jones.
- 2011: The project is released as a set of small FASTQ utilities.
- 2022: The repository shows later maintenance activity.
- 2022: v0.8.3 is listed among repository tags.

### Related projects

- fastq-tools complements larger FASTQ quality-control and preprocessing tools by providing focused filters and counters for shell pipelines.

### ソース

- <https://github.com/dcjones/fastq-tools>
- <https://github.com/dcjones/fastq-tools#readme>
- <https://api.github.com/repos/dcjones/fastq-tools/tags>


## セキュリティノート

narrow executable package without higher-risk signals.

- **Geiger リスク:** グリーン / 低
- narrow executable package without higher-risk signals

## ソースデータベース詳細

- **Source Database:** Homebrew formula API
- **Tap:** homebrew/core
- **Full Name:** fastq-tools
- **Version Scheme:** 0
- **Revision:** 0
- **Bottle Stable Root URL:** <https://ghcr.io/v2/homebrew/core>
- **Deprecated:** yes
- **Disabled:** no
- **Keg Only:** no
- **URL Keys:** stable


## 関連リンク

- [Source-control packages](https://www.automicvault.com/ja/pkg/source-control-tools/) - Belongs to a source-control command family.
- [Terminal utility packages](https://www.automicvault.com/ja/pkg/terminal-utilities/) - Matched terminal and command-line workflow metadata.
- [Networking and protocol packages](https://www.automicvault.com/ja/pkg/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata.
- [Scientific computing packages](https://www.automicvault.com/ja/pkg/scientific-computing-tools/) - Matched scientific computing metadata.
- [pcre](https://www.automicvault.com/ja/pkg/brew/pcre/) - Runtime dependency declared by Homebrew.
- [autoconf](https://www.automicvault.com/ja/pkg/brew/autoconf/) - Build dependency declared by Homebrew.
- [automake](https://www.automicvault.com/ja/pkg/brew/automake/) - Build dependency declared by Homebrew.
- [libtool](https://www.automicvault.com/ja/pkg/brew/libtool/) - Build dependency declared by Homebrew.
- [fastp](https://www.automicvault.com/ja/pkg/brew/fastp/) - Shares av.db curated category or tags: bioinformatics, cli, fastq, science, sequencing.
- [rasusa](https://www.automicvault.com/ja/pkg/brew/rasusa/) - Shares av.db curated category or tags: bioinformatics, cli, fastq, science, sequencing.
- [adapterremoval](https://www.automicvault.com/ja/pkg/brew/adapterremoval/) - Shares av.db curated category or tags: bioinformatics, cli, science, sequencing.
- [fastqc](https://www.automicvault.com/ja/pkg/brew/fastqc/) - Shares av.db curated category or tags: bioinformatics, cli, fastq, science, sequencing.
- [sickle](https://www.automicvault.com/ja/pkg/brew/sickle/) - Shares av.db curated category or tags: bioinformatics, cli, fastq, science, sequencing.
- [alevin-fry](https://www.automicvault.com/ja/pkg/brew/alevin-fry/) - Shares av.db curated category or tags: bioinformatics, cli, science, sequencing.
- [bbtools](https://www.automicvault.com/ja/pkg/brew/bbtools/) - Shares av.db curated category or tags: bioinformatics, cli, science, sequencing.
- [bowtie2](https://www.automicvault.com/ja/pkg/brew/bowtie2/) - Shares av.db curated category or tags: bioinformatics, cli, science, sequencing.

## Combined YAML source

View the package source record on GitHub. [combined/fastq-tools.yml](https://github.com/automic-vault/db/blob/main/combined/fastq-tools.yml)


## ソース

- Nucleus package database
- Geiger risk classifier
- package-page enrichment
- curated package history
- package version freshness
- av.db category and tag curation
- package relationship graph
- cross-ecosystem install command graph