# bedtk を Homebrew でインストール

bedtk のインストール経路、実行ファイル、メタデータ、AI エージェント向けセキュリティノートを確認します。

## インストール

```sh
sudo av install brew:bedtk
```

追加のインストールコマンド:

### macOS

- Homebrew (100%):

```sh
brew install bedtk
```

  証拠: local Homebrew formula metadata

## パッケージ情報

- **パッケージキー:** brew:bedtk
- **パッケージマネージャ:** Homebrew
- **パッケージマネージャページ:** <https://formulae.brew.sh/formula/bedtk>
- **バージョン:** 1.2
- **ソース概要:** Simple toolset for BED files
- **ホームページ:** <https://github.com/lh3/bedtk>
- **リポジトリ:** <https://github.com/lh3/bedtk>
- **上流ドキュメント:** <https://github.com/lh3/bedtk#readme>
- **ライセンス:** MIT
- **ソースアーカイブ:** <https://github.com/lh3/bedtk/archive/refs/tags/v1.2.tar.gz>
- **生成日時:** 2026-07-10T07:20:53+00:00

## 実行可能ファイル

- bedtk (cli)
- bedtk (エイリアス)

## インストール挙動

- post-install フック: 未定義
- Bottle: 利用可能 対象 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux

## バージョンと鮮度

- ページ生成日: 2026-07-10
- マネージャ版: 1.2
- ローカルデータ: OK
- 上流リポジトリ: https://github.com/lh3/bedtk
- 検出された最新: v1.2 (最新)
- 情報: No package-manager update timestamp was available.
## プロジェクトの歴史と使われ方

bedtk is Heng Li's compact command-line toolkit for BED files, focused on fast interval overlap operations with a smaller scope than bedtools.

### プロジェクトの歴史

The bedtk repository was created in October 2019, with the first visible commit adding interval intersection. Its README describes a simple BED toolset implementing intersection, subtraction, sorting, merging, and breadth-of-coverage calculations.

The project is tied to the 2021 Bioinformatics article 'Bedtk: finding interval overlap with implicit interval tree,' which explains its algorithmic focus. Upstream releases reached v1.0 in April 2025 and v1.2 in August 2025.

### 採用の歴史

The supplied package metadata lists Homebrew packaging. Upstream positions bedtk as a narrow, performance-oriented companion rather than a complete bedtools replacement.

### 使われ方

bedtk is used for operations such as filtering overlapping or non-overlapping BED/VCF records, intersection without pre-sorting, coverage breadth, sorting, and merging.

### パッケージ好きにとっての重要性

bedtk is notable because it comes from the lh3 bioinformatics tool lineage and deliberately keeps the surface area small. It is the kind of package a genomics CLI user installs when they care about speed and memory more than a broad command catalog.

### タイムライン

- 2019: Repository created and initial intersection work committed.
- 2021: bedtk paper published in Bioinformatics.
- 2025: v1.0, v1.1, and v1.2 releases published.

### Related projects

- bedtools is explicitly named by upstream as broader and more versatile.
- cgranges is linked from the README and is related to the interval-overlap implementation family.

### ソース

- <https://api.github.com/repos/lh3/bedtk>
- <https://github.com/lh3/bedtk#readme>
- <https://github.com/lh3/bedtk/releases>
- source_facts.package-manager


## セキュリティノート

narrow executable package without higher-risk signals.

- **Geiger リスク:** グリーン / 低
- narrow executable package without higher-risk signals

## ソースデータベース詳細

- **Source Database:** Homebrew formula API
- **Tap:** homebrew/core
- **Full Name:** bedtk
- **Version Scheme:** 0
- **Revision:** 0
- **Bottle Stable Root URL:** <https://ghcr.io/v2/homebrew/core>
- **Deprecated:** no
- **Disabled:** no
- **Keg Only:** no
- **URL Keys:** stable


## 関連リンク

- [Source-control packages](https://www.automicvault.com/ja/pkg/source-control-tools/) - Belongs to a source-control command family.
- [Terminal utility packages](https://www.automicvault.com/ja/pkg/terminal-utilities/) - Matched terminal and command-line workflow metadata.
- [Networking and protocol packages](https://www.automicvault.com/ja/pkg/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata.
- [Scientific computing packages](https://www.automicvault.com/ja/pkg/scientific-computing-tools/) - Matched scientific computing metadata.
- [vcfanno](https://www.automicvault.com/ja/pkg/brew/vcfanno/) - Shares av.db curated category or tags: bed, bioinformatics, cli, science.
- [abpoa](https://www.automicvault.com/ja/pkg/brew/abpoa/) - Shares av.db curated category or tags: bioinformatics, cli, science.
- [abricate](https://www.automicvault.com/ja/pkg/brew/abricate/) - Shares av.db curated category or tags: bioinformatics, cli, science.
- [abyss](https://www.automicvault.com/ja/pkg/brew/abyss/) - Shares av.db curated category or tags: bioinformatics, cli, science.
- [adapterremoval](https://www.automicvault.com/ja/pkg/brew/adapterremoval/) - Shares av.db curated category or tags: bioinformatics, cli, science.
- [alevin-fry](https://www.automicvault.com/ja/pkg/brew/alevin-fry/) - Shares av.db curated category or tags: bioinformatics, cli, science.
- [any2fasta](https://www.automicvault.com/ja/pkg/brew/any2fasta/) - Shares av.db curated category or tags: bioinformatics, cli, science.
- [augustus](https://www.automicvault.com/ja/pkg/brew/augustus/) - Shares av.db curated category or tags: bioinformatics, cli, science.
- [fastq-tools](https://www.automicvault.com/ja/pkg/brew/fastq-tools/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, files, science.
- [sickle](https://www.automicvault.com/ja/pkg/brew/sickle/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, files, science.
- [vcflib](https://www.automicvault.com/ja/pkg/brew/vcflib/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, files, science.

## Combined YAML source

View the package source record on GitHub. [combined/bedtk.yml](https://github.com/automic-vault/db/blob/main/combined/bedtk.yml)


## ソース

- Nucleus package database
- Geiger risk classifier
- package-page enrichment
- curated package history
- package version freshness
- av.db category and tag curation
- package relationship graph
- cross-ecosystem install command graph