# abpoa を Homebrew, apt, Nix でインストール

abpoa のインストール経路、実行ファイル、メタデータ、AI エージェント向けセキュリティノートを確認します。

## インストール

```sh
sudo av install brew:abpoa
```

追加のインストールコマンド:

### macOS

- Homebrew (100%):

```sh
brew install abpoa
```

  証拠: local Homebrew formula metadata

### Linux

- Debian apt (92%):

```sh
sudo apt install abpoa
```

  証拠: Debian stable package indexes: abpoa from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz

- Nix (92%):

```sh
nix profile install nixpkgs#abpoa
```

  証拠: nixpkgs package indexes: pkgs/by-name/ab/abpoa/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1

## パッケージ情報

- **パッケージキー:** brew:abpoa
- **パッケージマネージャ:** Homebrew
- **パッケージマネージャページ:** <https://formulae.brew.sh/formula/abpoa>
- **バージョン:** 1.5.6
- **ソース概要:** SIMD-based C library for fast partial order alignment using adaptive band
- **ホームページ:** <https://github.com/yangao07/abPOA>
- **リポジトリ:** <https://github.com/yangao07/abPOA>
- **上流ドキュメント:** <https://doi.org/10.1093/bioinformatics/btaa963>
- **ライセンス:** MIT
- **ソースアーカイブ:** <https://github.com/yangao07/abPOA/releases/download/v1.5.6/abPOA-v1.5.6.tar.gz>
- **最終更新:** 2026-05-26T23:37:46-04:00
- **生成日時:** 2026-07-08T18:08:21+00:00

## 実行可能ファイル

- abpoa (cli)
- abpoa (エイリアス)

## インストール挙動

- post-install フック: 未定義
- Bottle: 利用可能 対象 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux

## バージョンと鮮度

- ページ生成日: 2026-07-08
- マネージャ版: 1.5.6
- マネージャ更新日: 2026-05-26
- ローカルデータ: OK
- 上流リポジトリ: https://github.com/yangao07/abPOA
- 情報: No cached GitHub release or tag data was available.
## プロジェクトの歴史と使われ方

abPOA is a C library and command-line tool for adaptive-banded partial-order alignment, multiple sequence alignment, and consensus generation. Package maintainers care about it because it exposes a performance-sensitive bioinformatics primitive as a small buildable C package with command-line, conda, Homebrew, and Python-facing usage.

### プロジェクトの歴史

The first GitHub release, v1.0.0, was published on April 15, 2020. The project was described in Bioinformatics later in 2020 as an SIMD-based C library for fast partial order alignment using adaptive banding, and the upstream README presents it as an extended version of partial-order alignment with adaptive banded dynamic programming and SIMD implementation.

### 採用の歴史

The README documents installation via conda and Homebrew, source builds, prebuilt Linux and macOS binaries, and a pyabpoa Python package. The input metadata also shows distribution packaging in Homebrew, Debian, Nix, and Ubuntu, which is typical for bioinformatics tools that need both reproducible workflows and local command-line execution.

### 使われ方

abPOA accepts FASTA, FASTQ, and gzip-compressed FASTA/FASTQ input, performs sequence-to-graph alignment, emits consensus FASTA by default, and can also emit row-column MSA, GFA graph output, amino-acid consensus, and graph plots. The README documents global, local, and extension alignment modes plus linear, affine, and convex gap penalties.

### パッケージ好きにとっての重要性

The package is significant because it turns a common long-read consensus and MSA building block into a portable SIMD-aware command-line dependency. Its release notes continue to mention packaging-facing work such as pyproject.toml for pyabpoa and SIMD dispatch.

### タイムライン

- 2020: First public GitHub release v1.0.0.
- 2020: Bioinformatics article published for abPOA.
- 2025: v1.5.4 added SIMD dispatch and Python 3.13 installation fixes.
- 2026: v1.5.6 added easier incremental MSA and pyproject.toml for pyabpoa.

### Related projects

- The README explicitly frames abPOA as an extension of partial-order alignment and references heaviest bundling for consensus generation. It also ships pyabpoa for Python users and connects to Bioconda and Homebrew packaging for workflow installation.

### ソース

- <https://doi.org/10.1093/bioinformatics/btaa963>
- <https://github.com/yangao07/abPOA#readme>
- <https://github.com/yangao07/abPOA/releases>
- input source_facts.package-manager


## セキュリティノート

library-like package without higher-risk signals.

- **Geiger リスク:** グリーン / 低
- library-like package without higher-risk signals

## ソースデータベース詳細

- **Source Database:** Homebrew formula API
- **Tap:** homebrew/core
- **Full Name:** abpoa
- **Version Scheme:** 0
- **Revision:** 0
- **Head Version:** HEAD
- **Bottle Stable Root URL:** <https://ghcr.io/v2/homebrew/core>
- **Deprecated:** no
- **Disabled:** no
- **Keg Only:** no
- **URL Keys:** head, stable

## 他のパッケージマネージャ記録

- Debian apt - abpoa - 1.5.3-1+b4: normalized package name match | Debian stable package indexes: abpoa from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | adaptive banded Partial Order Alignment | https://github.com/yangao07/abPOA
- Debian apt - python3-pyabpoa - 1.5.3-1+b4: normalized package name match | Debian stable package indexes: python3-pyabpoa from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | adaptive banded Partial Order Alignment - python3 module | https://github.com/yangao07/abPOA
- Nix - abpoa: normalized package name match | nixpkgs package indexes: pkgs/by-name/ab/abpoa/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1
- Ubuntu apt - abpoa - 1.5.1-1build1: normalized package name match | Ubuntu 24.04 LTS package indexes: abpoa from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | adaptive banded Partial Order Alignment | https://github.com/yangao07/abPOA
- Ubuntu apt - python3-pyabpoa - 1.5.1-1build1: normalized package name match | Ubuntu 24.04 LTS package indexes: python3-pyabpoa from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | adaptive banded Partial Order Alignment - python3 module | https://github.com/yangao07/abPOA


## 関連リンク

- [Source-control packages](https://www.automicvault.com/ja/pkg/source-control-tools/) - Belongs to a source-control command family.
- [Terminal utility packages](https://www.automicvault.com/ja/pkg/terminal-utilities/) - Matched terminal and command-line workflow metadata.
- [Networking and protocol packages](https://www.automicvault.com/ja/pkg/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata.
- [Scientific computing packages](https://www.automicvault.com/ja/pkg/scientific-computing-tools/) - Matched scientific computing metadata.
- [diamond](https://www.automicvault.com/ja/pkg/brew/diamond/) - Shares av.db curated category or tags: bioinformatics, cli, science, sequence-alignment.
- [mafft](https://www.automicvault.com/ja/pkg/brew/mafft/) - Shares av.db curated category or tags: bioinformatics, cli, science, sequence-alignment.
- [minimap2](https://www.automicvault.com/ja/pkg/brew/minimap2/) - Shares av.db curated category or tags: bioinformatics, cli, science, sequence-alignment.
- [spoof-mac](https://www.automicvault.com/ja/pkg/brew/spoof-mac/) - Shares av.db curated category or tags: bioinformatics, cli, partial-order-alignment, science, sequence-alignment.
- [blast](https://www.automicvault.com/ja/pkg/brew/blast/) - Shares av.db curated category or tags: bioinformatics, cli, science, sequence-alignment.
- [bwa](https://www.automicvault.com/ja/pkg/brew/bwa/) - Shares av.db curated category or tags: bioinformatics, cli, science, sequence-alignment.
- [freesasa](https://www.automicvault.com/ja/pkg/brew/freesasa/) - Shares av.db curated category or tags: bioinformatics, c-library, cli, science.
- [genometools](https://www.automicvault.com/ja/pkg/brew/genometools/) - Shares av.db curated category or tags: bioinformatics, c-library, cli, science.

## Combined YAML source

View the package source record on GitHub. [combined/abpoa.yml](https://github.com/automic-vault/db/blob/main/combined/abpoa.yml)


## ソース

- Nucleus package database
- Geiger risk classifier
- package-page enrichment
- curated package history
- package version freshness
- av.db category and tag curation
- package relationship graph
- external package-manager database matches
- cross-ecosystem install command graph