# Installer seqkit avec Homebrew, apt, Nix

Consultez les chemins d'installation, exécutables, métadonnées et notes de sécurité de seqkit pour les workflows d'agents IA.

## installation

```sh
sudo av install brew:seqkit
```

Commandes d'installation supplémentaires:

### macOS

- Homebrew (100%):

```sh
brew install seqkit
```

  Preuve: local Homebrew formula metadata

### Linux

- Debian apt (92%):

```sh
sudo apt install seqkit
```

  Preuve: Debian stable package indexes: seqkit from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz

- Nix (92%):

```sh
nix profile install nixpkgs#seqkit
```

  Preuve: nixpkgs package indexes: pkgs/by-name/se/seqkit/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1

## Faits du paquet

- **Clé du paquet:** brew:seqkit
- **Gestionnaire de paquets:** Homebrew
- **Page du gestionnaire de paquets:** <https://formulae.brew.sh/formula/seqkit>
- **Version:** 2.13.0
- **Résumé source:** Cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
- **Page d'accueil:** <https://bioinf.shenwei.me/seqkit>
- **Dépôt:** <https://github.com/shenwei356/seqkit>
- **Docs amont:** <https://bioinf.shenwei.me/seqkit>
- **Licence:** MIT
- **Archive source:** <https://github.com/shenwei356/seqkit/archive/refs/tags/v2.13.0.tar.gz>
- **Généré:** 2026-07-08T18:08:21+00:00

## exécutables

- seqkit (cli)
- seqkit (alias)

## Dépendances de compilation

- go

## Comportement d'installation

- hook post-installation: non défini
- Bouteille: disponible sur arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux

## Version et fraîcheur

- page générée: 2026-07-08
- version du gestionnaire: 2.13.0
- données locales: OK
- dépôt amont: https://github.com/shenwei356/seqkit
- dernière version détectée: v2.13.0 (à jour)
- info: No package-manager update timestamp was available.

## Notes de sécurité

narrow executable package without higher-risk signals.

- **Risque Geiger:** vert / faible
- narrow executable package without higher-risk signals

## Détails de la base source

- **Source Database:** Homebrew formula API
- **Tap:** homebrew/core
- **Full Name:** seqkit
- **Version Scheme:** 0
- **Revision:** 0
- **Head Version:** HEAD
- **Bottle Stable Root URL:** <https://ghcr.io/v2/homebrew/core>
- **Deprecated:** no
- **Disabled:** no
- **Keg Only:** no
- **URL Keys:** head, stable

## Autres enregistrements de gestionnaires de paquets

- Debian apt - seqkit - 2.9.0+ds-1+b4: normalized package name match | Debian stable package indexes: seqkit from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | cross-platform and ultrafast toolkit for FASTA/Q file manipulation | https://github.com/shenwei356/seqkit
- Debian apt - seqkit-examples - 2.9.0+ds-1: normalized package name match | Debian stable package indexes: seqkit-examples from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | examples for seqkit: toolkit for FASTA/Q file manipulation | https://github.com/shenwei356/seqkit
- Nix - seqkit: normalized package name match | nixpkgs package indexes: pkgs/by-name/se/seqkit/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1
- Ubuntu apt - seqkit - 2.3.1+ds-2: normalized package name match | Ubuntu 24.04 LTS package indexes: seqkit from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | cross-platform and ultrafast toolkit for FASTA/Q file manipulation | https://github.com/shenwei356/seqkit
- Ubuntu apt - seqkit-examples - 2.3.1+ds-2: normalized package name match | Ubuntu 24.04 LTS package indexes: seqkit-examples from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | examples for seqkit: toolkit for FASTA/Q file manipulation | https://github.com/shenwei356/seqkit


## Liens liés

- [Terminal utility packages](https://www.automicvault.com/fr/pkg/terminal-utilities/) - Matched terminal and command-line workflow metadata.
- [Networking and protocol packages](https://www.automicvault.com/fr/pkg/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata.
- [Scientific computing packages](https://www.automicvault.com/fr/pkg/scientific-computing-tools/) - Matched scientific computing metadata.
- [Homebrew utility packages](https://www.automicvault.com/fr/pkg/brew-utility-packages/) - Matched Homebrew package provider.
- [go](https://www.automicvault.com/fr/pkg/brew/go/) - Build dependency declared by Homebrew.
- [seqtk](https://www.automicvault.com/fr/pkg/brew/seqtk/) - Shares av.db curated category or tags: bioinformatics, cli, fasta, fastq, science.
- [hmmer](https://www.automicvault.com/fr/pkg/brew/hmmer/) - Shares av.db curated category or tags: bioinformatics, cli, science, sequence-analysis.
- [mmseqs2](https://www.automicvault.com/fr/pkg/brew/mmseqs2/) - Shares av.db curated category or tags: bioinformatics, cli, science, sequence-analysis.
- [any2fasta](https://www.automicvault.com/fr/pkg/brew/any2fasta/) - Shares av.db curated category or tags: bioinformatics, cli, fasta, science.
- [fastp](https://www.automicvault.com/fr/pkg/brew/fastp/) - Shares av.db curated category or tags: bioinformatics, cli, fastq, science.
- [fastq-tools](https://www.automicvault.com/fr/pkg/brew/fastq-tools/) - Shares av.db curated category or tags: bioinformatics, cli, fastq, science.
- [fastqc](https://www.automicvault.com/fr/pkg/brew/fastqc/) - Shares av.db curated category or tags: bioinformatics, cli, fastq, science.
- [gffread](https://www.automicvault.com/fr/pkg/brew/gffread/) - Shares av.db curated category or tags: bioinformatics, cli, fasta, science.

## Combined YAML source

View the package source record on GitHub. [combined/seqkit.yml](https://github.com/automic-vault/db/blob/main/combined/seqkit.yml)


## Sources

- Nucleus package database
- Geiger risk classifier
- package-page enrichment
- package version freshness
- av.db category and tag curation
- package relationship graph
- external package-manager database matches
- cross-ecosystem install command graph