# Installer minimap2 avec Homebrew, apt, Nix Consultez les chemins d'installation, exécutables, métadonnées et notes de sécurité de minimap2 pour les workflows d'agents IA. ## installation ```sh sudo av install brew:minimap2 ``` Commandes d'installation supplémentaires: ### macOS - Homebrew (100%): ```sh brew install minimap2 ``` Preuve: local Homebrew formula metadata ### Linux - Debian apt (92%): ```sh sudo apt install libminimap2-dev ``` Preuve: Debian stable package indexes: libminimap2-dev from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz - Nix (92%): ```sh nix profile install nixpkgs#minimap2 ``` Preuve: nixpkgs package indexes: pkgs/by-name/mi/minimap2/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1 ## Faits du paquet - **Clé du paquet:** brew:minimap2 - **Gestionnaire de paquets:** Homebrew - **Page du gestionnaire de paquets:** - **Version:** 2.31 - **Résumé source:** Versatile pairwise aligner for genomic and spliced nucleotide sequences - **Page d'accueil:** - **Dépôt:** - **Docs amont:** - **Licence:** MIT - **Archive source:** - **Dernière mise à jour:** 2026-05-20T00:41:23Z - **Généré:** 2026-07-08T18:08:21+00:00 ## exécutables - minimap2 (cli) - sdust (cli) - minimap2 (alias) - sdust (alias) ## Comportement d'installation - hook post-installation: non défini - Bouteille: disponible sur arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux ## Version et fraîcheur - page générée: 2026-07-08 - version du gestionnaire: 2.31 - gestionnaire mis à jour: 2026-05-20 - données locales: OK - dépôt amont: https://github.com/lh3/minimap2 - dernière version détectée: v2.31 (à jour) ## Historique du projet et usages minimap2 is Heng Li's successor to the original minimap, designed for the alignment problems created by long-read sequencing and large genomic assemblies. The 2017 preprint and 2018 Bioinformatics paper present it as a general-purpose pairwise aligner for DNA and long mRNA sequences, motivated by ultra-long reads, full-length transcript reads, and contigs that older aligners could not process efficiently at scale. ### Historique du projet Its major technical contribution is being broad without being slow. The paper describes minimap2 as usable for short reads, assembly contigs, noisy long genomic reads, RNA-seq reads, read overlap detection, and full-genome alignment. The implementation combines fast chaining with base-level alignment improvements, including Suzuki-Kasahara dynamic programming, to make long-read and splice-aware alignment practical. The project README highlights the same practical presets: PacBio and Oxford Nanopore genomic reads, Iso-Seq and Nanopore RNA/cDNA alignment, Illumina reads, assembly-to-assembly comparison, and related-species genome alignment. ### Modes d'utilisation minimap2 became a core bioinformatics command-line tool because long-read sequencing workflows needed one aligner that could cover many data types. It is invoked directly in pipelines and through higher-level platforms, producing SAM or PAF output for downstream tools such as samtools, variant callers, assemblers, and transcript analysis software. In package managers it sits in the genomics CLI niche beside aligners such as BWA-MEM, Bowtie2, BLASR, NGMLR, and GMAP, with its reputation tied to speed, accuracy, and long-read versatility. ### Sources - - - - ## Notes de sécurité Aucun manifest local de gestion des secrets correspondant n'a été trouvé pour minimap2. Les métadonnées de paquet Nucleus restent publiées ici afin que la couverture future dispose d'une URL stable. ## Détails de la base source - **Source Database:** Homebrew formula API - **Tap:** homebrew/core - **Full Name:** minimap2 - **Version Scheme:** 0 - **Revision:** 0 - **Bottle Stable Root URL:** - **Deprecated:** no - **Disabled:** no - **Keg Only:** no - **URL Keys:** stable ## Autres enregistrements de gestionnaires de paquets - Debian apt - libminimap2-dev - 2.27+dfsg-1+b3: normalized package name match | Debian stable package indexes: libminimap2-dev from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | development headers for libminimap | https://github.com/lh3/minimap2 - Debian apt - minimap2 - 2.27+dfsg-1+b3: normalized package name match | Debian stable package indexes: minimap2 from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | versatile pairwise aligner for genomic and spliced nucleotide sequences | https://github.com/lh3/minimap2 - Debian apt - python3-mappy - 2.27+dfsg-1+b3: normalized package name match | Debian stable package indexes: python3-mappy from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Python3 interface minimap2 | https://github.com/lh3/minimap2 - Nix - minimap2: normalized package name match | nixpkgs package indexes: pkgs/by-name/mi/minimap2/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1 - Ubuntu apt - libminimap2-dev - 2.26+dfsg-1build1: normalized package name match | Ubuntu 24.04 LTS package indexes: libminimap2-dev from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | development headers for libminimap | https://github.com/lh3/minimap2 - Ubuntu apt - minimap2 - 2.26+dfsg-1build1: normalized package name match | Ubuntu 24.04 LTS package indexes: minimap2 from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | versatile pairwise aligner for genomic and spliced nucleotide sequences | https://github.com/lh3/minimap2 - Ubuntu apt - python3-mappy - 2.26+dfsg-1build1: normalized package name match | Ubuntu 24.04 LTS package indexes: python3-mappy from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | Python3 interface minimap2 | https://github.com/lh3/minimap2 ## Liens liés - [Source-control packages](https://www.automicvault.com/fr/pkg/source-control-tools/) - Belongs to a source-control command family. - [Terminal utility packages](https://www.automicvault.com/fr/pkg/terminal-utilities/) - Matched terminal and command-line workflow metadata. - [Networking and protocol packages](https://www.automicvault.com/fr/pkg/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata. - [Scientific computing packages](https://www.automicvault.com/fr/pkg/scientific-computing-tools/) - Matched scientific computing metadata. - [abpoa](https://www.automicvault.com/fr/pkg/brew/abpoa/) - Shares av.db curated category or tags: bioinformatics, cli, science, sequence-alignment. - [diamond](https://www.automicvault.com/fr/pkg/brew/diamond/) - Shares av.db curated category or tags: bioinformatics, cli, science, sequence-alignment. - [lastz](https://www.automicvault.com/fr/pkg/brew/lastz/) - Shares av.db curated category or tags: bioinformatics, cli, dna, genomics, science. - [mafft](https://www.automicvault.com/fr/pkg/brew/mafft/) - Shares av.db curated category or tags: bioinformatics, cli, science, sequence-alignment. - [mummer](https://www.automicvault.com/fr/pkg/brew/mummer/) - Shares av.db curated category or tags: bioinformatics, cli, dna, genomics, science. - [bbtools](https://www.automicvault.com/fr/pkg/brew/bbtools/) - Shares av.db curated category or tags: bioinformatics, cli, dna, genomics, science. - [blast](https://www.automicvault.com/fr/pkg/brew/blast/) - Shares av.db curated category or tags: bioinformatics, cli, genomics, science, sequence-alignment. - [breseq](https://www.automicvault.com/fr/pkg/brew/breseq/) - Shares av.db curated category or tags: bioinformatics, cli, dna, genomics, science. - [miniprot](https://www.automicvault.com/fr/pkg/brew/miniprot/) - Local package facts share a topical domain. Shared terms: alignment, bioinformatics, cli, genomics, science. - [bwa](https://www.automicvault.com/fr/pkg/brew/bwa/) - Local package facts share a topical domain. Shared terms: aligner, alignment, bioinformatics, cli, dna. ## Combined YAML source View the package source record on GitHub. [combined/minimap2.yml](https://github.com/automic-vault/db/blob/main/combined/minimap2.yml) ## Sources - Nucleus package database - Geiger risk classifier - package-page enrichment - curated package history - package version freshness - av.db category and tag curation - package relationship graph - external package-manager database matches - cross-ecosystem install command graph