# Installer bowtie2

Consultez les chemins d'installation, exécutables, métadonnées et notes de sécurité de bowtie2 pour les workflows d'agents IA.

## installation

```sh
sudo av install brew:bowtie2
```

Commandes d'installation supplémentaires:

### macOS

- Homebrew (100%):

```sh
brew install bowtie2
```

  Preuve: local Homebrew formula metadata

- MacPorts (94%):

```sh
sudo port install bowtie2
```

  Preuve: MacPorts ports tree: science/bowtie2/Portfile from https://api.github.com/repos/macports/macports-ports/git/trees/master?recursive=1

### Linux

- Debian apt (92%):

```sh
sudo apt install bowtie2
```

  Preuve: Debian stable package indexes: bowtie2 from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz

- dnf (92%):

```sh
sudo dnf install bowtie2
```

  Preuve: Fedora Rawhide package metadata: bowtie2 from https://dl.fedoraproject.org/pub/fedora/linux/development/rawhide/Everything/x86_64/os/repodata/13ee7b80cb813542594d4235c4a0b8695435d5ecf23dd3580bc7515ae1b6180d-primary.xml.zst

- Nix (92%):

```sh
nix profile install nixpkgs#bowtie2
```

  Preuve: nixpkgs package indexes: pkgs/by-name/bo/bowtie2/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1

- zypper (92%):

```sh
sudo zypper install bowtie2
```

  Preuve: openSUSE Tumbleweed package metadata: bowtie2 from https://download.opensuse.org/tumbleweed/repo/oss/repodata/155b97171d05e27afd950b6fe0d55513ff38f4597110664535bceedc680bbe6fd459f0733718dcc21dcf0efc7c8250fd1390c73d4790b42e62fb2c16a87242e5-primary.xml.zst

## Faits du paquet

- **Clé du paquet:** brew:bowtie2
- **Gestionnaire de paquets:** Homebrew
- **Page du gestionnaire de paquets:** <https://formulae.brew.sh/formula/bowtie2>
- **Version:** 2.5.5
- **Résumé source:** Fast and sensitive gapped read aligner
- **Page d'accueil:** <https://bowtie-bio.sourceforge.net/bowtie2/index.shtml>
- **Dépôt:** <https://github.com/BenLangmead/bowtie2>
- **Docs amont:** <https://bowtie-bio.sourceforge.net/bowtie2/index.shtml>
- **Licence:** GPL-3.0-or-later
- **Archive source:** <https://github.com/BenLangmead/bowtie2/archive/refs/tags/v2.5.5.tar.gz>
- **Mis à jour:** 2026-02-17T20:26:53Z
- **Source générée:** 2026-05-26T22:45:13+00:00

## exécutables

- bowtie2 (cli)
- bowtie2-align-l (cli)
- bowtie2-align-s (cli)
- bowtie2-build (cli)
- bowtie2-build-l (cli)
- bowtie2-build-s (cli)
- bowtie2-inspect (cli)
- bowtie2-inspect-l (cli)
- bowtie2-inspect-s (cli)
- bowtie2 (alias)
- bowtie2-align-l (alias)
- bowtie2-align-s (alias)
- bowtie2-build (alias)
- bowtie2-build-l (alias)
- bowtie2-build-s (alias)
- bowtie2-inspect (alias)
- bowtie2-inspect-l (alias)
- bowtie2-inspect-s (alias)

## Dépendances de compilation

- simde

## Bibliothèques fournies par macOS

- perl
- python

## Comportement d'installation

- hook post-installation: non défini
- Bouteille: disponible sur arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux

## fraîcheur

- page générée: 2026-05-26
- version du gestionnaire: 2.5.5
- gestionnaire mis à jour: 2026-02-17
- données locales: ok
- dépôt amont: https://github.com/BenLangmead/bowtie2
- dernière version détectée: v2.5.5 (current)

## Notes de sécurité

narrow executable package without higher-risk signals.

- **Risque Geiger:** green / low
- narrow executable package without higher-risk signals

## Liens liés

- [simde](https://www.automicvault.com/pkg/brew/simde/) - Build dependency declared by Homebrew.
- [breseq](https://www.automicvault.com/pkg/brew/breseq/) - Popular package that depends on this formula.

## Sources

- Nucleus package database
- Geiger risk classifier
- package-page enrichment
- package version freshness
- package relationship graph
- cross-ecosystem install command graph