# Installer bedtk avec Homebrew Consultez les chemins d'installation, exécutables, métadonnées et notes de sécurité de bedtk pour les workflows d'agents IA. ## installation ```sh sudo av install brew:bedtk ``` Commandes d'installation supplémentaires: ### macOS - Homebrew (100%): ```sh brew install bedtk ``` Preuve: local Homebrew formula metadata ## Faits du paquet - **Clé du paquet:** brew:bedtk - **Gestionnaire de paquets:** Homebrew - **Page du gestionnaire de paquets:** - **Version:** 1.2 - **Résumé source:** Simple toolset for BED files - **Page d'accueil:** - **Dépôt:** - **Docs amont:** - **Licence:** MIT - **Archive source:** - **Généré:** 2026-07-10T07:20:53+00:00 ## exécutables - bedtk (cli) - bedtk (alias) ## Comportement d'installation - hook post-installation: non défini - Bouteille: disponible sur arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux ## Version et fraîcheur - page générée: 2026-07-10 - version du gestionnaire: 1.2 - données locales: OK - dépôt amont: https://github.com/lh3/bedtk - dernière version détectée: v1.2 (à jour) - info: No package-manager update timestamp was available. ## Historique du projet et usages bedtk is Heng Li's compact command-line toolkit for BED files, focused on fast interval overlap operations with a smaller scope than bedtools. ### Historique du projet The bedtk repository was created in October 2019, with the first visible commit adding interval intersection. Its README describes a simple BED toolset implementing intersection, subtraction, sorting, merging, and breadth-of-coverage calculations. The project is tied to the 2021 Bioinformatics article 'Bedtk: finding interval overlap with implicit interval tree,' which explains its algorithmic focus. Upstream releases reached v1.0 in April 2025 and v1.2 in August 2025. ### Historique d'adoption The supplied package metadata lists Homebrew packaging. Upstream positions bedtk as a narrow, performance-oriented companion rather than a complete bedtools replacement. ### Modes d'utilisation bedtk is used for operations such as filtering overlapping or non-overlapping BED/VCF records, intersection without pre-sorting, coverage breadth, sorting, and merging. ### Pourquoi les passionnés de paquets s'y intéressent bedtk is notable because it comes from the lh3 bioinformatics tool lineage and deliberately keeps the surface area small. It is the kind of package a genomics CLI user installs when they care about speed and memory more than a broad command catalog. ### Chronologie - 2019: Repository created and initial intersection work committed. - 2021: bedtk paper published in Bioinformatics. - 2025: v1.0, v1.1, and v1.2 releases published. ### Related projects - bedtools is explicitly named by upstream as broader and more versatile. - cgranges is linked from the README and is related to the interval-overlap implementation family. ### Sources - - - - source_facts.package-manager ## Notes de sécurité narrow executable package without higher-risk signals. - **Risque Geiger:** vert / faible - narrow executable package without higher-risk signals ## Détails de la base source - **Source Database:** Homebrew formula API - **Tap:** homebrew/core - **Full Name:** bedtk - **Version Scheme:** 0 - **Revision:** 0 - **Bottle Stable Root URL:** - **Deprecated:** no - **Disabled:** no - **Keg Only:** no - **URL Keys:** stable ## Liens liés - [Source-control packages](https://www.automicvault.com/fr/pkg/source-control-tools/) - Belongs to a source-control command family. - [Terminal utility packages](https://www.automicvault.com/fr/pkg/terminal-utilities/) - Matched terminal and command-line workflow metadata. - [Networking and protocol packages](https://www.automicvault.com/fr/pkg/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata. - [Scientific computing packages](https://www.automicvault.com/fr/pkg/scientific-computing-tools/) - Matched scientific computing metadata. - [vcfanno](https://www.automicvault.com/fr/pkg/brew/vcfanno/) - Shares av.db curated category or tags: bed, bioinformatics, cli, science. - [abpoa](https://www.automicvault.com/fr/pkg/brew/abpoa/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [abricate](https://www.automicvault.com/fr/pkg/brew/abricate/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [abyss](https://www.automicvault.com/fr/pkg/brew/abyss/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [adapterremoval](https://www.automicvault.com/fr/pkg/brew/adapterremoval/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [alevin-fry](https://www.automicvault.com/fr/pkg/brew/alevin-fry/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [any2fasta](https://www.automicvault.com/fr/pkg/brew/any2fasta/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [augustus](https://www.automicvault.com/fr/pkg/brew/augustus/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [fastq-tools](https://www.automicvault.com/fr/pkg/brew/fastq-tools/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, files, science. - [sickle](https://www.automicvault.com/fr/pkg/brew/sickle/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, files, science. - [vcflib](https://www.automicvault.com/fr/pkg/brew/vcflib/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, files, science. ## Combined YAML source View the package source record on GitHub. [combined/bedtk.yml](https://github.com/automic-vault/db/blob/main/combined/bedtk.yml) ## Sources - Nucleus package database - Geiger risk classifier - package-page enrichment - curated package history - package version freshness - av.db category and tag curation - package relationship graph - cross-ecosystem install command graph