# samtools installieren

Prüfe Installationswege, Executables, Metadaten und Sicherheitshinweise für samtools in AI-Agent-Workflows.

## Installation

```sh
sudo av install brew:samtools
```

Weitere Installationsbefehle:

### macOS

- Homebrew (100%):

```sh
brew install samtools
```

  Evidenz: local Homebrew formula metadata

- MacPorts (94%):

```sh
sudo port install samtools
```

  Evidenz: MacPorts ports tree: science/samtools/Portfile from https://api.github.com/repos/macports/macports-ports/git/trees/master?recursive=1

### Linux

- Debian apt (92%):

```sh
sudo apt install samtools
```

  Evidenz: Debian stable package indexes: samtools from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz

- dnf (92%):

```sh
sudo dnf install samtools
```

  Evidenz: Fedora Rawhide package metadata: samtools from https://dl.fedoraproject.org/pub/fedora/linux/development/rawhide/Everything/x86_64/os/repodata/13ee7b80cb813542594d4235c4a0b8695435d5ecf23dd3580bc7515ae1b6180d-primary.xml.zst

- Nix (92%):

```sh
nix profile install nixpkgs#samtools
```

  Evidenz: nixpkgs package indexes: pkgs/by-name/sa/samtools/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1

- zypper (92%):

```sh
sudo zypper install samtools
```

  Evidenz: openSUSE Tumbleweed package metadata: samtools from https://download.opensuse.org/tumbleweed/repo/oss/repodata/155b97171d05e27afd950b6fe0d55513ff38f4597110664535bceedc680bbe6fd459f0733718dcc21dcf0efc7c8250fd1390c73d4790b42e62fb2c16a87242e5-primary.xml.zst

## Paketfakten

- **Paketschlüssel:** brew:samtools
- **Paketmanager:** Homebrew
- **Paketmanager-Seite:** <https://formulae.brew.sh/formula/samtools>
- **Version:** 1.23.1
- **Quellzusammenfassung:** Tools for manipulating next-generation sequencing data
- **Homepage:** <https://www.htslib.org/>
- **Repository:** <https://github.com/samtools/samtools>
- **Upstream-Dokumentation:** <https://www.htslib.org/>
- **Lizenz:** MIT
- **Quellarchiv:** <https://github.com/samtools/samtools/releases/download/1.23.1/samtools-1.23.1.tar.bz2>
- **Aktualisiert:** 2026-03-18T18:10:04Z
- **Generierte Quelle:** 2026-05-26T22:45:13+00:00

## Executables

- ace2sam (cli)
- blast2sam.pl (cli)
- bowtie2sam.pl (cli)
- export2sam.pl (cli)
- fasta-sanitize.pl (cli)
- interpolate_sam.pl (cli)
- maq2sam-long (cli)
- maq2sam-short (cli)
- md5fa (cli)
- md5sum-lite (cli)
- novo2sam.pl (cli)
- plot-ampliconstats (cli)
- plot-bamstats (cli)
- psl2sam.pl (cli)
- sam2vcf.pl (cli)
- samtools (cli)
- samtools.pl (cli)
- seq_cache_populate.pl (cli)
- soap2sam.pl (cli)
- wgsim (cli)
- wgsim_eval.pl (cli)
- zoom2sam.pl (cli)
- ace2sam (Alias)
- blast2sam.pl (Alias)
- bowtie2sam.pl (Alias)
- export2sam.pl (Alias)
- fasta-sanitize.pl (Alias)
- interpolate_sam.pl (Alias)
- maq2sam-long (Alias)
- maq2sam-short (Alias)
- md5fa (Alias)
- md5sum-lite (Alias)
- novo2sam.pl (Alias)
- plot-ampliconstats (Alias)
- plot-bamstats (Alias)
- psl2sam.pl (Alias)
- sam2vcf.pl (Alias)
- samtools (Alias)
- samtools.pl (Alias)
- seq_cache_populate.pl (Alias)
- soap2sam.pl (Alias)
- wgsim (Alias)
- wgsim_eval.pl (Alias)
- zoom2sam.pl (Alias)

## Abhängigkeiten

- htslib

## Von macOS bereitgestellte Bibliotheken

- ncurses

## Installationsverhalten

- Post-install-Hook: nicht definiert
- Bottle: verfügbar auf arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux

## Aktualität

- Seite generiert: 2026-05-26
- Manager-Version: 1.23.1
- Manager aktualisiert: 2026-03-18
- lokale Daten: ok
- Upstream-Repository: https://github.com/samtools/samtools
- info: No cached GitHub release or tag data was available.

## Sicherheitshinweise

narrow executable package without higher-risk signals.

- **Geiger-Risiko:** green / low
- narrow executable package without higher-risk signals

## Verwandte Links

- [htslib](https://www.automicvault.com/pkg/brew/htslib/) - Runtime dependency declared by Homebrew.
- [flye](https://www.automicvault.com/pkg/brew/flye/) - Popular package that depends on this formula.
- [bcftools](https://www.automicvault.com/pkg/brew/bcftools/) - Shares the same upstream homepage.

## Quellen

- Nucleus package database
- Geiger risk classifier
- package-page enrichment
- package version freshness
- package relationship graph
- cross-ecosystem install command graph