# bowtie2 installieren

Prüfe Installationswege, Executables, Metadaten und Sicherheitshinweise für bowtie2 in AI-Agent-Workflows.

## Installation

```sh
sudo av install brew:bowtie2
```

Weitere Installationsbefehle:

### macOS

- Homebrew (100%):

```sh
brew install bowtie2
```

  Evidenz: local Homebrew formula metadata

- MacPorts (94%):

```sh
sudo port install bowtie2
```

  Evidenz: MacPorts ports tree: science/bowtie2/Portfile from https://api.github.com/repos/macports/macports-ports/git/trees/master?recursive=1

### Linux

- Debian apt (92%):

```sh
sudo apt install bowtie2
```

  Evidenz: Debian stable package indexes: bowtie2 from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz

- dnf (92%):

```sh
sudo dnf install bowtie2
```

  Evidenz: Fedora Rawhide package metadata: bowtie2 from https://dl.fedoraproject.org/pub/fedora/linux/development/rawhide/Everything/x86_64/os/repodata/13ee7b80cb813542594d4235c4a0b8695435d5ecf23dd3580bc7515ae1b6180d-primary.xml.zst

- Nix (92%):

```sh
nix profile install nixpkgs#bowtie2
```

  Evidenz: nixpkgs package indexes: pkgs/by-name/bo/bowtie2/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1

- zypper (92%):

```sh
sudo zypper install bowtie2
```

  Evidenz: openSUSE Tumbleweed package metadata: bowtie2 from https://download.opensuse.org/tumbleweed/repo/oss/repodata/155b97171d05e27afd950b6fe0d55513ff38f4597110664535bceedc680bbe6fd459f0733718dcc21dcf0efc7c8250fd1390c73d4790b42e62fb2c16a87242e5-primary.xml.zst

## Paketfakten

- **Paketschlüssel:** brew:bowtie2
- **Paketmanager:** Homebrew
- **Paketmanager-Seite:** <https://formulae.brew.sh/formula/bowtie2>
- **Version:** 2.5.5
- **Quellzusammenfassung:** Fast and sensitive gapped read aligner
- **Homepage:** <https://bowtie-bio.sourceforge.net/bowtie2/index.shtml>
- **Repository:** <https://github.com/BenLangmead/bowtie2>
- **Upstream-Dokumentation:** <https://bowtie-bio.sourceforge.net/bowtie2/index.shtml>
- **Lizenz:** GPL-3.0-or-later
- **Quellarchiv:** <https://github.com/BenLangmead/bowtie2/archive/refs/tags/v2.5.5.tar.gz>
- **Aktualisiert:** 2026-02-17T20:26:53Z
- **Generierte Quelle:** 2026-05-26T22:45:13+00:00

## Executables

- bowtie2 (cli)
- bowtie2-align-l (cli)
- bowtie2-align-s (cli)
- bowtie2-build (cli)
- bowtie2-build-l (cli)
- bowtie2-build-s (cli)
- bowtie2-inspect (cli)
- bowtie2-inspect-l (cli)
- bowtie2-inspect-s (cli)
- bowtie2 (Alias)
- bowtie2-align-l (Alias)
- bowtie2-align-s (Alias)
- bowtie2-build (Alias)
- bowtie2-build-l (Alias)
- bowtie2-build-s (Alias)
- bowtie2-inspect (Alias)
- bowtie2-inspect-l (Alias)
- bowtie2-inspect-s (Alias)

## Build-Abhängigkeiten

- simde

## Von macOS bereitgestellte Bibliotheken

- perl
- python

## Installationsverhalten

- Post-install-Hook: nicht definiert
- Bottle: verfügbar auf arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux

## Aktualität

- Seite generiert: 2026-05-26
- Manager-Version: 2.5.5
- Manager aktualisiert: 2026-02-17
- lokale Daten: ok
- Upstream-Repository: https://github.com/BenLangmead/bowtie2
- neueste erkannte Version: v2.5.5 (current)

## Sicherheitshinweise

narrow executable package without higher-risk signals.

- **Geiger-Risiko:** green / low
- narrow executable package without higher-risk signals

## Verwandte Links

- [simde](https://www.automicvault.com/pkg/brew/simde/) - Build dependency declared by Homebrew.
- [breseq](https://www.automicvault.com/pkg/brew/breseq/) - Popular package that depends on this formula.

## Quellen

- Nucleus package database
- Geiger risk classifier
- package-page enrichment
- package version freshness
- package relationship graph
- cross-ecosystem install command graph