# bedtk mit Homebrew installieren Prüfe Installationswege, Executables, Metadaten und Sicherheitshinweise für bedtk in AI-Agent-Workflows. ## Installation ```sh sudo av install brew:bedtk ``` Weitere Installationsbefehle: ### macOS - Homebrew (100%): ```sh brew install bedtk ``` Evidenz: local Homebrew formula metadata ## Paketfakten - **Paketschlüssel:** brew:bedtk - **Paketmanager:** Homebrew - **Paketmanager-Seite:** - **Version:** 1.2 - **Quellzusammenfassung:** Simple toolset for BED files - **Homepage:** - **Repository:** - **Upstream-Dokumentation:** - **Lizenz:** MIT - **Quellarchiv:** - **Generiert:** 2026-07-10T07:20:53+00:00 ## Executables - bedtk (cli) - bedtk (Alias) ## Installationsverhalten - Post-install-Hook: nicht definiert - Bottle: verfügbar auf arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux ## Version und Aktualität - Seite generiert: 2026-07-10 - Manager-Version: 1.2 - lokale Daten: OK - Upstream-Repository: https://github.com/lh3/bedtk - neueste erkannte Version: v1.2 (aktuell) - Info: No package-manager update timestamp was available. ## Projektgeschichte und Nutzung bedtk is Heng Li's compact command-line toolkit for BED files, focused on fast interval overlap operations with a smaller scope than bedtools. ### Projektgeschichte The bedtk repository was created in October 2019, with the first visible commit adding interval intersection. Its README describes a simple BED toolset implementing intersection, subtraction, sorting, merging, and breadth-of-coverage calculations. The project is tied to the 2021 Bioinformatics article 'Bedtk: finding interval overlap with implicit interval tree,' which explains its algorithmic focus. Upstream releases reached v1.0 in April 2025 and v1.2 in August 2025. ### Adoptionsgeschichte The supplied package metadata lists Homebrew packaging. Upstream positions bedtk as a narrow, performance-oriented companion rather than a complete bedtools replacement. ### Wie es verwendet wird bedtk is used for operations such as filtering overlapping or non-overlapping BED/VCF records, intersection without pre-sorting, coverage breadth, sorting, and merging. ### Warum Paket-Nerds sich dafür interessieren bedtk is notable because it comes from the lh3 bioinformatics tool lineage and deliberately keeps the surface area small. It is the kind of package a genomics CLI user installs when they care about speed and memory more than a broad command catalog. ### Zeitleiste - 2019: Repository created and initial intersection work committed. - 2021: bedtk paper published in Bioinformatics. - 2025: v1.0, v1.1, and v1.2 releases published. ### Related projects - bedtools is explicitly named by upstream as broader and more versatile. - cgranges is linked from the README and is related to the interval-overlap implementation family. ### Quellen - - - - source_facts.package-manager ## Sicherheitshinweise narrow executable package without higher-risk signals. - **Geiger-Risiko:** grün / niedrig - narrow executable package without higher-risk signals ## Details aus der Quelldatenbank - **Source Database:** Homebrew formula API - **Tap:** homebrew/core - **Full Name:** bedtk - **Version Scheme:** 0 - **Revision:** 0 - **Bottle Stable Root URL:** - **Deprecated:** no - **Disabled:** no - **Keg Only:** no - **URL Keys:** stable ## Verwandte Links - [Source-control packages](https://www.automicvault.com/de/pkg/source-control-tools/) - Belongs to a source-control command family. - [Terminal utility packages](https://www.automicvault.com/de/pkg/terminal-utilities/) - Matched terminal and command-line workflow metadata. - [Networking and protocol packages](https://www.automicvault.com/de/pkg/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata. - [Scientific computing packages](https://www.automicvault.com/de/pkg/scientific-computing-tools/) - Matched scientific computing metadata. - [vcfanno](https://www.automicvault.com/de/pkg/brew/vcfanno/) - Shares av.db curated category or tags: bed, bioinformatics, cli, science. - [abpoa](https://www.automicvault.com/de/pkg/brew/abpoa/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [abricate](https://www.automicvault.com/de/pkg/brew/abricate/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [abyss](https://www.automicvault.com/de/pkg/brew/abyss/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [adapterremoval](https://www.automicvault.com/de/pkg/brew/adapterremoval/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [alevin-fry](https://www.automicvault.com/de/pkg/brew/alevin-fry/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [any2fasta](https://www.automicvault.com/de/pkg/brew/any2fasta/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [augustus](https://www.automicvault.com/de/pkg/brew/augustus/) - Shares av.db curated category or tags: bioinformatics, cli, science. - [fastq-tools](https://www.automicvault.com/de/pkg/brew/fastq-tools/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, files, science. - [sickle](https://www.automicvault.com/de/pkg/brew/sickle/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, files, science. - [vcflib](https://www.automicvault.com/de/pkg/brew/vcflib/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, files, science. ## Combined YAML source View the package source record on GitHub. [combined/bedtk.yml](https://github.com/automic-vault/db/blob/main/combined/bedtk.yml) ## Quellen - Nucleus package database - Geiger risk classifier - package-page enrichment - curated package history - package version freshness - av.db category and tag curation - package relationship graph - cross-ecosystem install command graph